barSeed - Barley Seed Development Database

Probe CUST_426_PI390587928

Source Contig U35_38388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_426_PI390587928	Hv_44K_v2	ATCTTTCTCTCCGCAAACCTAGATTTGGGTTGTATCCGTTGTGTATTATATTTTCTATGG	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366344	2696	3e-22	2561 - 2619	98	59 / 60	plus	ABC06657 ABC08195
MLOC	AK362272	2335	3e-22	2166 - 2224	98	59 / 60	plus	ABC06657 ABC08195
Harvest21	ABC34342	632	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_38388	632	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_38388 632 Hv_44K_v2
GTGGATCCCCCGGGCTGTAGGCTGGTCTATTCATGCAAAGAGTCCAAAATAATGAGGATT
GGTCCCTGTTTTGTCCTAATGAAGCTCTGGGGTTGGCTGATTGTTGGGGTGGGAAGTTTG
AGGAATTGTACAAGAAATATGAGAAAGCAGGCAAAGCAAAAAAAGGGCATTCCTTCACAG
ACCCTCTGGTTTGACATTTTGAAGTCACAGATAGAAACTGGCACACCTTATATGCTCTAT
CTTATTGTTATGGGTTCAAGGCTACTTAAGGCATGGGGTCATTAACCAGCACACAAGGCA
GCATGACGATAGCTCTCTTAAAAATAGATTAGTTAGGATTGCATCCAAAGATATATAGTT
GATCAACTCTCTCAAAATGTAAGATGTTTTTTGACATCGAGATTAATTAAGCAAGAAAAC
ATGAGGGATACCATCCACTTTTCATACTCCCGTCCAGAGCACGGGCCCATCTTTCTCTCC
GCAAACCTAGATTTGGGTTGTATCCGTTGTGTATTATATTTTCTATGGAGCTATGTATGT
ATGGATGCTATGGAACTATATGTATATATGGATGCTATGGAATTTTGGATGTATGGATGC
TATGGAATTTTGATATATGGATCATGAAATTT

Homology of Contig U35_38388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None