barSeed - Barley Seed Development Database

Probe CUST_4268_PI390587928

Source Contig U35_19006

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4268_PI390587928	Hv_44K_v2	TTTATCTGCGGAGAAAATTAGTAAGTGAGGGGCATGAGCGTTGGGTTCCATATGATAATA	824	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59238.3	2886	2e-24	1733 - 1792	100	60 / 60	plus	ABC11034 ABC44346
MLOC	MLOC_59238.2	3117	2e-24	1764 - 1823	100	60 / 60	plus	ABC11034 ABC14148 ABC44346
MLOC	MLOC_59238.1	2948	2e-24	1839 - 1898	100	60 / 60	plus	ABC11034 ABC44346
JLOC1	JLOC1_38537.2	2951	8e-25	1737 - 1796	100	60 / 60	plus
JLOC1	JLOC1_38537.1	3110	8e-25	1753 - 1812	100	60 / 60	plus
Harvest21	ABC12428	884	3e-25	825 - 884	100	60 / 60	plus
Harvest35	U35_19006	884	3e-25	825 - 884	100	60 / 60	plus

Contig Sequence (884 bp)

>U35_19006 884 Hv_44K_v2
GGAAAGATTCGCTAAGTGCCAACTGGTCCTTTTACATGCTTCTTATCCATATTCTAAGGA
AGCATCCTATCTTGCATCTGTTTACTCTCAGGTCTATCTTGATTTTGGTTCGGCGATCCC
AAAACTTAGTGTTCAAGGAATGGTGTCATCACTTAAAGAGCTTCTGGAGCTAGCTCCCAT
AAACAAGGTCATGTTTAGTTCAGATGGATACGCTTTTCCGGAGACATACTATCTAGGTTC
AAGAAGGGCACGTGATGTTGTTTACCATGTCCTATCAGCTGCATGTGAAGATGGTGATCT
TAGCATTCAGGAAGCTATTGATGCAGTTGAGGACATCTTTAGAAGAAATGCATCGGATCT
ATACAAGTTGAACGTTGCCAATGGGTCAACTCACCAGAAAACTATGATAGCTGACAGTAG
GATAGCATCATCTTGTGTTGAACAAGATGTCCTCTTTGTTCGCATCGTCTGGAATGATGC
TTCAGGTCAACATAGATGCCGCGTTGTCCCAGCCGGAAGGTTTTATGAGATTGCAAGGAA
TAAGGGTGTCGGCCTGACTTTTGCATCAATGGGAATGACTTCCTTTTCTGATGGCCCAGC
TGATGGGACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCAGATATGTCAACGCT
TTTGAGACTACCATGGTCAACACGTGAGGAAATGGTGATAGCTGACATGCAAATTAGGCC
TGGAGAAGCCTGGGAATACTGTCCTAGATATGCCTTAAGAAAAGTCACAAAAGTTCTGCT
GGATGAATTCAATGTGACAATGAAGGCAGGTTTCGAGAATGAATTTTATCTGCGGAGAAA
ATTAGTAAGTGAGGGGCATGAGCGTTGGGTTCCATATGATAATA

Homology of Contig U35_19006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31820.1	846	3e-169	protein\|fluG, putative, expressed
Brachypodium v1_2	Bradi3g27877.1	843	0.0
Arabidopsis v10	AT3G53180.1	852	1e-121	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases \| chr3:19707068-19711188 FORWARD LENGTH=852