barSeed - Barley Seed Development Database

Probe CUST_4261_PI390587928

Source Contig U35_21323

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4261_PI390587928	Hv_44K_v2	ACCTAAGTGTCAGCAGTGTGAGTGTCACCAACTAATGTTCTTGTCTTGTGTCGTAAAAAA	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252705.1	1924	3e-22	1804 - 1859	100	56 / 56	plus	ABC02996 ABC02999 ABC39745
MLOC	MLOC_38733.1	575	3e-22	279 - 334	100	56 / 56	plus	None
JLOC1	JLOC1_25206.1	420	1e-22	275 - 330	100	56 / 56	plus
Harvest35	U35_21323	674	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_21323 674 Hv_44K_v2
TACCAGGTGTACTGCCAGCCCCTGTTCGCCTTCGTGGAGAAGTGGGCGGCGAAGAGGTGG
CCGGAGTCGACGTTCGTCACCGGCGAGGTCGAGGTCCCGCTCTTCCGGACGTACAAGGTG
AACATGTTCCGGGCGACGTGGCGGACGGCGTTCGTGGTAGCGACGACGGTGGTGTCCATG
ATGCTGCCCTTCTTCAACGACGTGGTGGGGTTCCTGGGCGCGCTGGGGTTCTGGCCGCTC
ACCGTATACTTCCCGGTGGAGATGTACGTGGTGCAGAAGAAGGTGCCCAAGTGGAGCACG
CGGTGGGTGTGCCTCCAGATGCTCAGCGTCGGATGCCTCGCCATCTCCCTCGCCGCCGCC
GCGGGGTCCATCGCCGGCATCAAGTCCGACCTCAAGGTGTACCACCCGTTCAAGTCATAA
TCGACGTCTGACCATCATGCACGCATGCACCGAAGAACAGATCAAGATAGCGTCCGGTAA
AGTTCACCGTGGGCTGCAGGGTGAAAGCCAAACTGTGCCAAAAAGAAGGGGGACAAGATA
CCGAAGTGTCAACAAATTGTTTAGGCTGGCTAATGACCGCCGTAGTTGCCTCAAAGAAAA
GATACCTAAGTGTCAGCAGTGTGAGTGTCACCAACTAATGTTCTTGTCTTGTGTCGTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_21323 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66010.1	489	3e-69	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi2g56970.1	488	2e-68
Arabidopsis v10	AT1G44100.1	480	1e-56	\| Symbols: AAP5 \| amino acid permease 5 \| chr1:16764651-16767223 REVERSE LENGTH=480