barSeed - Barley Seed Development Database

Probe CUST_42289_PI390587928

Source Contig U35_36745

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42289_PI390587928	Hv_44K_v2	AAGGGAATCCAAACACAGTAATGGCTCTTGCTGGGAACAAGGCTGATATGCTAGAAGCAA	368	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366997	3284	2e-24	2747 - 2806	100	60 / 60	plus	ABC01883 ABC01885 ABC06326 ABC06921 ABC21171 ABC37654
MLOC	MLOC_5164.2	555	2e-24	410 - 469	100	60 / 60	minus	ABC06326 ABC06921
MLOC	MLOC_5164.1	826	2e-24	447 - 506	100	60 / 60	minus	ABC06326 ABC06921
JLOC1	JLOC1_3304.1	1090	8e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC32027	433	3e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC06327	771	3e-25	541 - 600	100	60 / 60	plus
Harvest21	ABC06326	1121	3e-25	537 - 596	100	60 / 60	plus	ABC06326
Harvest35	U35_36745	433	3e-25	369 - 428	100	60 / 60	plus
Harvest35	U35_16382	1172	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (433 bp)

>U35_36745 433 Hv_44K_v2
GCAGCATCCCTCTCTGTGTACACACGCGAGTCGCCAAGAAGAAAGTCCCAAACTTTCTCC
GCTCGATCGATCGATCCGTCCGTCCGTCGCCGCCGGAGCTCCTTCCTCCCCGGATTCGCC
GCCCCCTCCAGCGATCGATCGGATCCCGCCGGCCGGAGGTCCCCCGACCCCCGCCCGATC
CACCCCCATGGCGGCCAACGCCGGCGCCGGCGCCGGCGGCAGCAAGATCCGCAACGCCAA
GCTGGTTCTTCTAGGGGACGTCGGCACCGGCAAGTCCAGCCTGGTGCTCCGCTTCGTCAA
GGGCCAGTTCGTCGAGTTCCAGGCCTCTTTTACACGTGCAAAGAAATGGGTTCAAGAACT
TCAAGCACAAGGGAATCCAAACACAGTAATGGCTCTTGCTGGGAACAAGGCTGATATGCT
AGAAGCAAGGCAG

Homology of Contig U35_36745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None