barSeed - Barley Seed Development Database

Probe CUST_42222_PI390587928

Source Contig U35_24796

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42222_PI390587928	Hv_44K_v2	CAGTTTGCTGAAACTGTTATTAGTCAGAGAAGCTGTTTACTGAAATTGCTTTAGTCTGAA	620	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358049	2345	7e-23	1205 - 1264	98	59 / 60	plus	ABC02507 ABC02804 ABC02809 ABC02810 ABC02811 ABC42898 ABC50535
JLOC1	JLOC1_40265.1	190	8e-25	7 - 66	100	60 / 60	plus
Harvest21	ABC27628	597	3e-25	428 - 487	100	60 / 60	plus
Harvest21	ABC18636	1101	3e-25	620 - 679	100	60 / 60	plus
Harvest35	U35_24796	1102	3e-25	621 - 680	100	60 / 60	plus

Contig Sequence (1102 bp)

>U35_24796 1102 Hv_44K_v2
GATGACCAGTAAATAACCTTTCGAACATGGTTACCAGAGTTGCTGTAACAGCCTTTGAAA
GCCCCAGCTGAGGTTTGAAATTGATGACAATCGGTGAGGATTTGGTGTCCGGTTCGTAGA
TGGGTGCCAAACCAATGAAATCAAGATAGAATGGAATATGGGAGGTTATGATTTCTTCCA
GCTGCCATCTGCCACTAATATGGTTCTGAGGCAGCAGAAGGCTGGGAACTTGCATATGCA
CCTTAAGATATATTCGCTATTTTATCTTTGTCATCGTCGCCAAAGAAAGATATATCTTGT
TGCAGATGGGATGCATGTCCGATAAGATTGAGTATTTGAGATGCACCCAGCTCAACATAG
TTGGCTTTATAGTTTTTTTTTTGCGGGAAGACTCTATAGTTTCTTATCCTTATCTTTTAT
GCAGACTACATATCAATATTTTTTTCTGACGGTAATTTTGTAGATATACAGTTCATGCAA
GTTTCTGAATGTGTTTGTGTGGTGATGATGGGGAGCTGAATCGATATTCTTGCTTGAATT
TTTTTTATGAACTATATGCTACATGCCCATGATCCTTGAGGTTGTATCTTATTGGGTTGC
TAATCTGATTGTGTTTGAACCAGTTTGCTGAAACTGTTATTAGTCAGAGAAGCTGTTTAC
TGAAATTGCTTTAGTCTGAAAAATAGTTAACTGAAACTGTTTAGCCAACAGATCATTTCA
GTACTTCCGTTTGGTACTATTTAGCCATAAAAGCTTAGTTCCTTGCTAACAGTTAAGGGT
TTACATATCTCACTCTTGTGTTTCTATAGTTGAATAACCATTTCCCATTTTTTGGCATGG
CATACCAAGGATTTGCTAGCGGTGATCCAGAGAGAGATGGCAATGCAATCCGTATATTCC
TTGAAGATGGACACCAAATTGGATGTGCTCAGTCATATGCAAAGAACATGGGTCTTTATG
GACAGAGAGCGGGATGTCCGAGGGAAGCATTGTCCGTTTGGTAGACACTGTCGATGAGCC
TATCCAAGCTATCGACATCAGTGGCAGCCGCTGCGGCGGCACCCCGCAATGGTGGCAGGG
ATGGGAGTCGTTTGTGCACTCC

Homology of Contig U35_24796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None