barSeed - Barley Seed Development Database

Probe CUST_421_PI415269222

Source Contig TA32651_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_421_PI415269222	Hv_44K_v2	CACCAACACCCTGATTTCAGTGATTTGTGAGCAGGAAATCGAAGTATACTCCAGCTAGGA	89	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71136.4	1508	2e-24	109 - 168	100	60 / 60	plus	ABC04260 ABC13997 ABC43432 ABC49969
MLOC	MLOC_71136.2	1460	2e-24	158 - 217	100	60 / 60	plus	ABC04260 ABC13997 ABC43432 ABC49969
MLOC	MLOC_71136.3	557	2e-24	149 - 208	100	60 / 60	plus	ABC04260
Harvest35	U35_1107	1507	1e-24	1 - 59	100	59 / 59	plus

Contig Sequence (1142 bp)

>TA32651_4513 1142 Hv_44K_v2
TGACGTTGCCATGCCGTCGACACGTAGTGTCTGACGTCCANTCCGGCTCNTCGGCGTGCC
TATTTATTCTCATCTGCGGGCTGGGCAAACACCAACACCCTGATTTCAGTGATTTGTGAG
CAGGAAATCGAAGTATACTCCAGCTAGGAGCCTAGGCGAAGAAGCAGAGCGAGCAATCAT
CAATGGAGAAAGGCACGCCCGCGCTCGGTTGGGCCGCGAGAGACGAGTCCGGTCTCCTCT
CCCCCTACAGCTTCTCGAGAAGGGCCCGGAAGGACGAGGATGTGACGATCAAGGTGCTCT
TCTGCGGGATCTGCCACACCGACCTCCACATCGCCAAGAACGAGTGGGGCAACGCCCTCT
ACCCCATCGTTCCCGGGCATGAGATTGTGGGCGTCGTCACCGACGTCGGCCCTGGCGTCA
AGAGCTTCAAGGTCGGGGACACGGTGGGCGTGGGCTACTTCGTTGACTCCTGCCGCTCGT
GCGGCACCTGCAGCAAGGGGTACGAGAACTACTGCTCCACCCTCGTGCTCACCTCCAACG
GCGTGGACTACGACGGCGCCACCACCCAGGGGGGTTTCTCAGACGTGCTCGTCGTCAACC
AGGACTACGTCCTCCGCGTCCCGGAGAGCCTGTCTCTCGCCGGGGCGGCGCCGTTGCTCT
GCGCCGGCGTCACGGTGTACAGCCCGATGATGCAGTACGGCCTCAACGCGCCGGGGAAGC
ACCTCGGAGTCGTCGGCCTCGGGGGTCTCGGCCACATGGCCGTCAAGTTCGGCAAGGCGT
TCGGGATGACCGTCACCGTGATCAGCTCGTCGCCGAGGAAGCGCGAGGAGGCGCTCGAGC
GCCTCGGCGCCGACGCGTTCTTGGTCAGCCAGGACGCCGAGCAAATGAAGGCTGCGGCGG
GGACGATGGACGGCATCATCGACACGGTGTCGGCGGTGCACCCGCTCGTGCCACTGCTGG
AGCTGATGAAGCCGATGGGGCAGATGGTGGTGGTCGGCGCGCCAAGCGAGCCCCTGGCGC
TGCCAGCCTACCCCATCATCAGATGCTGCAAGCGCTTGGCCGGGAACGGCGTGGCCAGCG
TGCGCAACTGCCAGGCCATTCTGGACTTCGCGGGGAAGCACGGCATCACCGGGGGCTGTC
AG

Homology of Contig TA32651_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g23560.1	363	2e-168	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g29770.1	358	0.0
Arabidopsis v10	AT4G37980.1	357	9e-132	\| Symbols: ELI3-1, ELI3, ATCAD7, CAD7 \| elicitor-activated gene 3-1 \| chr4:17852670-17854302 FORWARD LENGTH=357