barSeed - Barley Seed Development Database

Probe CUST_42116_PI390587928

Source Contig U35_18084

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42116_PI390587928	Hv_44K_v2	GGATTGTTGAGCCTATGCTATTCCAGACAGTGCATGCCTTGGGACACCGAAGTTAAAAAA	1585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38263.1	1588	9e-22	178 - 232	100	55 / 55	minus	ABC10055
JLOC1	JLOC1_24868.1	1473	5e-22	1374 - 1428	100	55 / 55	plus
Harvest21	ABC10055	1530	3e-25	1460 - 1519	100	60 / 60	plus	ABC10055
Harvest35	U35_18084	1656	3e-25	1586 - 1645	100	60 / 60	plus

Contig Sequence (1656 bp)

>U35_18084 1656 Hv_44K_v2
ACCTCCACCCCCGTCCCCGAGGGGTCAGAATCACTCCGCGCTTTCCCTTCCTTCGGACCC
AAGCAAGCGAGCGAGCGCGGGAACCCGAGGGCGAACGGCGAGCCCCGCCCCGACATCGGC
GCGAGCTCCCTCCCTCCCTCCCCGAACCGCCAGCGGAGGCCGCCTCTTCCGGCGTGGCCG
GGGCAGCTCGCGGGGTTTACCGGGCTCCGGACCGGCGCGGCGGCGAGGCGGCGGGCGGGG
ACGATGATGGACGGCGGCGCGGCCGGCGCGAGCAACGGCGGATCCGGGGCCGATGCGGAC
GCCGCCAGGAGGAACACCAGGATGCCCAAGTATTCCAAGTTCACGCAGCAGGAGCTGCCG
GCCTGTAAGCCGATCCTTACTCCAAAATGGGTTGTCTCGGTTTTTTTCCTTGTCGGCGTC
ATCTTTGTCCCAGTTGGTGTCGTCTCGTTACTAGCTGCACAAGATGTTGTTGAGATCATT
GATCGGTATGATCATGCATGTGTCCCACCTAACATGACTGATAATAAGCTTGCGTACATC
CAGAATGAGACTATATCTAAAGAGTGCACAAGGACTCTCACGGTTACAAAGGAGATGAAG
CAGCCAATTTACGTGTACTACCAACTTGACAACTTTTATCAGAATCATAGGAGGTATGTG
AAGAGCCGAAATGATGCACAACTAAGAGATTCTAAGAAGTCAAATACGACCACCTCATGT
GAACCTGAGAGGTTCACGGCTGATGGAAAACCAATTGTTCCTTGTGGTCTGATTGCTTGG
AGTTTGTTTAATGACACATATAGCTTCAGTCGTGGTAAAGACAACTTGACAGTAAACAAG
AAGGACATCTCCTGGAAAAGTGATAGGGAGCACAAATTTGCCAAAAATGTCTACCCAAGC
AACTTCCAGAATGGTGCGCTCATAGGTGGTAAAAAGCTTAACTCGAGTATCCCGCTGAGC
GAACAGGAGGATCTTATCGTTTGGATGCGGACTGCAGCGCTTCCTACATTCAGAAAGTTA
TATGGGAGGATATACGTTGATCTCAAGGCGAATGATACCATAACTGTGAAGCTGAGTAAC
AACTACAATACATATAGCTTTGGTGGCAAGAAGAAGTTGGTCCTTTCCACTGCAACCTGG
CTTGGAGGAAAGAATGATTTTCTTGGGTTTGCATACCTCATAGTTGGTGGGCTCTGTATT
TTCTTGGCATTTGCATTCACCTTGCTATACTTGATAAAGCCAAGGAAACTGGGGGATCAC
AACTACCTGTCCTGGAACAGGAACCCCGCAGGCCGCTAAGGGTGTTCTCAAACTCGATAC
GGCGTACAATCAGTGCCCGCCTTCGACTAGTCGAAATGTATCATCATGCCCTAAATGATA
CTACCTGAGATTGCCCAGTAGCTCTAGACCACTTGTGTGTGTGTACATTTTAACAAGGGA
CCATTGTTCTTTTGTTTTCTTTGTTTGTTGTGTGTTAGGCTGCATACATATATCAGCCGT
GAAGGGGAAATACTACGGACGGAGTGTACTATGGAGTTTCGTATTTCACGGTATACGGGA
TTTGTTAACTCTCCTGTACTATAATGGATTGTTGAGCCTATGCTATTCCAGACAGTGCAT
GCCTTGGGACACCGAAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45430.1	359	0.0	protein\|cell cycle control protein, putative, expressed
Brachypodium v1_2	Bradi1g31850.1	354	0.0
Arabidopsis v10	AT1G54320.1	349	6e-154	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein \| chr1:20275732-20277793 REVERSE LENGTH=349