barSeed - Barley Seed Development Database

Probe CUST_42077_PI390587928

Source Contig U35_44374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42077_PI390587928	Hv_44K_v2	AAGGAAGATATCTTTAAGAACATTGATTGATCGTTCGGCGGTGGAGAGCTTTGGTGGTGG	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251275.1	2271	2e-24	1588 - 1647	100	60 / 60	plus	ABC09965
MLOC	MLOC_13943.6	1688	2e-24	1358 - 1417	100	60 / 60	plus	ABC09965
MLOC	MLOC_13943.3	2186	2e-24	1856 - 1915	100	60 / 60	plus	ABC09965
MLOC	MLOC_13943.2	2704	2e-24	2384 - 2443	100	60 / 60	plus	ABC09965
JLOC1	JLOC1_9488.2	1986	8e-25	1322 - 1381	100	60 / 60	plus
JLOC1	JLOC1_9488.1	2254	8e-25	1590 - 1649	100	60 / 60	plus
Harvest21	ABC42021	478	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_44374	478	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_44374 478 Hv_44K_v2
TCCCTTCGAAGAAATGAAATCAGTCATCAAGGAATAGAGCTGAAAAAGGGTGACATGTTT
GAGATCAAGGGGACAGATACTTTGCAGGCAGATGTGGAGATAGAGTTTGAGCCAGGAACC
ATGGATGGGGCTGAAACTTTTGATCCTTCCTGGCTCTTGGACACGGAGAAGCATTGCAGG
GAAGCAGATGCTTCAGCTCCTGGTGGCCTGGGGCCATTTGGGCTTGTGGTTGTAGCCTCT
GATAACCTGGAGGAGCACACTGATGTGCACTTTAGAGTCTACAAATCACAGCACAAGCAC
ATGATTCTTATGTGCTCTGATCTAAGAAGATCGTCCCTGAGGCCAGGGCTGTACACACCA
GCCTATGGAGGCTTCTTCGAATTTGACCTTGAAAAGGAAAGGAAGATATCTTTAAGAACA
TTGATTGATCGTTCGGCGGTGGAGAGCTTTGGTGGTGGCGGCAGGGTCTGCATCATGG

Homology of Contig U35_44374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73580.1	513	6e-84	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582	2e-83
Arabidopsis v10	None