barSeed - Barley Seed Development Database

Probe CUST_42072_PI390587928

Source Contig U35_44381

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42072_PI390587928	Hv_44K_v2	ATGCCTGATTGGCGCTGTATGGATCGTAATCCTCTCTTGAGTATCCTCATTGCAATGAAG	33	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63013.1	1327	2e-24	30 - 89	100	60 / 60	minus	ABC10713 ABC42036
JLOC1	JLOC1_41267.1	1345	8e-25	1207 - 1266	100	60 / 60	plus
Harvest21	ABC42036	570	3e-25	34 - 93	100	60 / 60	minus	ABC42036
Harvest35	U35_44381	570	3e-25	34 - 93	100	60 / 60	minus

Contig Sequence (570 bp)

>U35_44381 570 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAAAAATAAGACCGGCTTCATTGCAATGAGGATACTCAAGAG
AGGATTACGATCCATACAGCGCCAATCAGGCATACATGCAGATAACCTAATTGGAGAACT
TAAAGAGCATGTTGTGCTTGTACACCTGGCCAGGCCTCACGATCGACGACGGGAACTCAG
GGTGGTTGACGGCGTCGGGGTACGCCTGCGTCTCCAGGCACAGCGCGCCGTACTGCTCGT
ACACCTTGCCGGCTTTGCCCTTCTCGTTGCTGACCCAGTTGGAGGTGTAGAGCTGCACCC
CGGGCTGGTTCGCCCACAGCTCCAACGCCCGCCCGGACTCCGGGTCCCGGACGCACGCCA
CCTTCCGCATCGCGTCCTGCTGCCCGTCCACGACGAAGTTGATGTCGTAGCCGCCGCCGC
CGCCGGGGACGATGTCCATGTGCGCGCCCACGGGCGTCGGCGTACGGAAGTCATACATGG
TGCCGGCCACGGGCACGACCTGGCCCGTCGGGATCTTGGTGTCGTCGAGCGGCGTGTAGC
GCGACGCGAGCAGCTGGAGCTCGTGCTCCA

Homology of Contig U35_44381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38540.2	363	2e-66	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi5g12250.1	364	5e-87
Arabidopsis v10	None