barSeed - Barley Seed Development Database

Probe CUST_42060_PI390587928

Source Contig U35_3302

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42060_PI390587928	Hv_44K_v2	TTCCATCTTCTACGAACATCTGCAGCAGCCTGTATGTGTAGAGCAATTTCTCTGCGATGT	821	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.440	0.543	0.944	1.616	1.261	1.652
Raw	183.514	362.494	546.312	1462.707	404.747	576.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249699.1	1307	2e-24	1204 - 1263	100	60 / 60	plus	ABC08996 ABC08997
MLOC	MLOC_12822.1	2034	2e-24	699 - 758	100	60 / 60	plus	ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
MLOC	MLOC_12822.2	2123	2e-24	791 - 850	100	60 / 60	plus	ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
JLOC1	JLOC1_8620.1	2265	8e-25	697 - 756	100	60 / 60	plus
Harvest21	ABC52560	484	3e-25	383 - 442	100	60 / 60	plus
Harvest21	ABC08997	948	3e-25	44 - 103	100	60 / 60	minus	ABC08997
Harvest35	U35_3302	924	3e-25	822 - 881	100	60 / 60	plus

Contig Sequence (924 bp)

>U35_3302 924 Hv_44K_v2
GAGAGAGGAAGAAGTCTCCGTTCTCCAAGTCTCAACCCCTCTCCGAGGTTGGTGGCGGCC
GGCGGGCGAAGCAGATCAGATCCGCGGCTTTTCGGCGCAGGGGCGAGGCCCTCCCCGGAG
CTTCGGCCATCCGATTCCGCAGCCCGCCTCTGCGATGGTCTCTGGCTGCTGCTGCTGCTG
ACTGCGGTGATGAATTCGAGGCCGATCGTGCTCGTCTTCCTCCTGCTCGTGCTCATCATA
TCATCGCAGTTCGAGTGGAAGCAGCAGATCGGCGAGGCCGAGGCGAGCCCGGATGCTACG
CGGCGCAGGCAGCCAGCGCTGGTCGTAAGGGAAGACGCCGTTAAAGAGAAAATAATACTG
GCGCAGGAGAAGAACATCCAACAACTCACCGAGCTCATCCAGAGCCTCCAGGTGCAGCTA
CTGCATTGCCGTGGCAGCAACAACACTGCTCAGGGTGCCTCCTCGACTCAGTCTTCATCC
AGTTACACCGAAGCGGACAGACATCAGATAATCGATGACTGATCGCCCATCAGCATGCCC
AGGTCGTTTGCATCAGCAGACGGCGATCAAGGACATGCTCCTGAATGGATATGGAAGACA
CCGGGACCACTATGTAGTTAGGGTCCTGGTCTCCTGGAGTCTAGGGAGCTGTCTTAGTGT
ACTGATGTGCCTTGCTATTGACAGCACTATGACCACCGCCTTCACCCTCGGCTGTATAGG
GTTATATTGTAACTGTATCATGTAAATTTAGCCCACCTTCCTCATTGGGATTGAGATTGT
ACTCATACAGATTCCTGCCGCGATCATCATCGATTCTTTCCTTCCATCTTCTACGAACAT
CTGCAGCAGCCTGTATGTGTAGAGCAATTTCTCTGCGATGTGGTGGTCTGCAGGAAAGAG
GTAAAGCAGGCACTCTACAACCTA

Homology of Contig U35_3302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None