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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_42059_PI390587928Hv_44K_v2AAGAGAAAATAATACTGGCGCAGGAGAAGAACATCCAACAACTCACCGAGCTCATCCAGA360GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1900.3320.8871.7801.4162.166
Raw 50.927147.308324.1171044.471285.771480.749



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249699.113072e-24719 - 77810060 / 60plus ABC08996 ABC08997
MLOCMLOC_12822.120342e-24221 - 28010060 / 60plus ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
MLOCMLOC_12822.221232e-24313 - 37210060 / 60plus ABC07237 ABC07238 ABC07239 ABC08996 ABC08997
JLOC1JLOC1_8620.122658e-25219 - 27810060 / 60plus
Harvest21ABC089979483e-25529 - 58810060 / 60minusABC08997
Harvest21ABC089968253e-25340 - 39910060 / 60plusABC08996
Harvest35U35_33035493e-25361 - 42010060 / 60plus
Harvest35U35_33029243e-25344 - 40310060 / 60plus



Contig Sequence (549 bp)

>U35_3303 549 Hv_44K_v2
AGAGAAAGAAGTCTCCGTTCTCCAAGTCTCAACCCCTCTCCGAGGTTGGTGGCGGCCGGC
GGGCGAAGCAGATCAGATCCGCGGCTTTTCGGCGCAGGGGCGAGGCCCTCCCCGGAGCTT
CGGCCATCCGATTCCGCAGCCCGCCTCTGCGATGGTTCGATCTCCCGCCCAGCAGTCTCT
GGCTGCTGCTGCTGCTGACTGCGGTGATGAATTCGAGGCCGATCGTGCTCGTCTTCCTCC
TGCTCGTGCTCATCATATCATCGCAGTTCGAGTGGAAGCAGCAGATCGGCGAGGCCGAGG
CGAGCCCGGATGCTACGCGGCGCAGGCAGCCAGCGCTGGTCGTAAGGGAAGACGCCGTTA
AAGAGAAAATAATACTGGCGCAGGAGAAGAACATCCAACAACTCACCGAGCTCATCCAGA
GCCTCCAGGTGCAGCTACTGCATTGCCGTGGCAGCAACAACACTGCTCAGGGTGCCTCCT
CGACTCAGTCTTCATCCAGTTACACCGAAGCGGACAGACATCAGATAATCGATGACTGAT
CGCCCATCA



Homology of Contig U35_3303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None