barSeed - Barley Seed Development Database

Probe CUST_42051_PI390587928

Source Contig U35_3312

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42051_PI390587928	Hv_44K_v2	ATCACTCATGCAGGAGCTGAGTAGGGAGAGATCTGATAAACAACAGTTACCTATTTTGAA	797	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367504	1537	2e-24	790 - 849	100	60 / 60	plus	ABC07455 ABC07456 ABC07457
MLOC	MLOC_13427.1	1325	2e-24	893 - 952	100	60 / 60	plus	ABC07455 ABC07456 ABC07457
JLOC1	JLOC1_9090.2	1168	8e-25	836 - 895	100	60 / 60	plus
JLOC1	JLOC1_9090.1	1088	8e-25	836 - 895	100	60 / 60	plus
Harvest21	ABC07456	1527	3e-25	798 - 857	100	60 / 60	plus	ABC07456
Harvest35	U35_3312	1527	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (1527 bp)

>U35_3312 1527 Hv_44K_v2
GGAATCTTGGTGTGACCTACCACAGCCCCAATCCCGGCTCAATAAAAATCTTCCCCGAGC
TGCTGCCGAGCGTCGCCGCCGACGCCTCACGGCCGAAACCCTAACCCCTCTCACGCGCGT
CGCCGCTACCATCGCCGTTCCCATTCCACCTCGTCACGTCCCTGCCGTATACACCCCGTC
CGAAACCTTGGGCATTGGTTTCTGAAGGCCATCAGGATACCTAGCATCATCATGTCAGGA
AGAGATCGCCTGCCGCGCCGTTTTGTCGAAGATGGAAGGGGCTATGTTGACCCCCGTGTG
GCTGAGGATCGCAGGGGTCATCATCCTGGTATCCGTGTGGTTGATGATCGTAGGGGCCAT
CATGAGATCCGTGTAGTCGAAGATTGCAGAGCCTATCCTGCAGTTCGTGTGATTGAGGAT
CGTAGAGCTTACCCTGAGATTCACGAAAGGCCGCTCATGAGGGTGGCTCGCTCTCACCCG
GATGCTCTAGAGGAAGAAATTCAGTTGCACGAGGTTGAATTCCGCAGGCTTATGGCTGAT
CGTCATGCTTTAGCTGAGGAACGAATGGAGTTGCACAGGGAGTTGCAAGCTGGAAAGGAG
GAGGTCCGTCACCTGAACTTGATCATCGCAGAGATTAATGTCAAGAAGGAAGCTTATATC
AGCGAGCTCGTTGACAAGAGAAGGAAGCTTGAAGCTGAACTTAGATCAAATGAGCCTTTG
AGAGATGAGGTTATGCATCTTCGTGGTGAAATAGAGAAGCTCCTTGCTGTTAGGAAAGAA
CTCTCTGCAAAGGCTGCATCACTCATGCAGGAGCTGAGTAGGGAGAGATCTGATAAACAA
CAGTTACCTATTTTGAAAGCAGAGATTGAGGGCCTTCAACTGGAACTTACTCATGCAAGG
AATACATGTGAGTTGGAGCAGAAGGGGAACTTTGAGTTGGTGGAACAAAGGAAAGCAATG
GAGAAGAGTATGATTTCGATGGCACAAGAAATTCAACAAATGCGGGCCGAATTAGCTAGT
TTTGATGGCAGACCATGGGGCACAGGTGGAGCACATGGGATGAAGCTGGGCAGTCCTGAA
GCTACCTTTCCTACTCAATATGGAGATAAATACAATATACACGCGGGAGTTTCTGAGAAA
GGTCCTTCACACCCTCCTGAATCTTCGTGGGGCACATATGATAAGAACCGTTTCCAGTAC
CGCTAAGAGCCCAGCTGCTACATTCCTGGGAGAAAGAATCACCTTCTAGGTGTTAATTAT
CATATCACATGGTTTAGAATATCTTATCTACCTACTTGTTTGTGTTCTAGACTTCTTTAT
GCTTTGAATAATTATACTTTCTGTGTTAGTTGATAATATTTGTGCTGGCAGTATCCTGTT
ACTATTTACATATTGGCTCCAGATTTCTGCATGTTACTAGGATATCCAGGTTTCCTTGTT
AGATTGATCTATGACTATGACCATGACTAGCAATTATTTGAACGTGGTTTCGACTTTGGA
AAATCAAAAAAAAAAAAAGAAAAAAAA

Homology of Contig U35_3312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g09089.2	314	7e-154	protein\|protein kinase PKN/PRK1, effector, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT1G55170.1	283	1e-59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). \| chr1:20580578-20581706 FORWARD LENGTH=283