barSeed - Barley Seed Development Database

Probe CUST_41969_PI390587928

Source Contig U35_6720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41969_PI390587928	Hv_44K_v2	CTGCAACCTGTCTACTAGACAAGCATTCATGTTATGCACACTTTTGTGCATTCCAAAAAA	721	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70556.2	3216	7e-23	2941 - 2997	100	57 / 57	plus	ABC05119 ABC14390
JLOC1	JLOC1_46827.1	3308	4e-23	2941 - 2997	100	57 / 57	plus
Harvest21	ABC14390	787	3e-25	7 - 66	100	60 / 60	minus	ABC14390
Harvest35	U35_6720	787	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_6720 787 Hv_44K_v2
GAGCCAAAAGCATGAGCTGAATGTATCCACTTACCAGATGTGTGTTCTGATGTTGTTTAA
CTCTTCTGATGGACTTACCTACAAAGACATCGAGCAAGCTACAGAGATACCTTCCACAGA
CCTAAAGAGATGTCTCCAGTCTCTTGCTTGTGTCAAGGGGAAGAATGTTCTCCGTAAAGA
GCCCATGAGCAAGGACATATCAGAGGATGACACATTCTTCTTCAATGACAAGTTCACAAG
CAAGCTTGTTAAGGTGAAGATCGGGACAGTGGTGGCGGCAAAGGAATCTGAGCCAGAGAA
GCAGGAGACCCGCCAGCGGGTTGAGGAGGACAGGAAACCTCAGATTGAGGCCGCCATCGT
GAGGATCATGAAATCTAGGAGGGTCTTGGATCATAACAGTATTGTCTCCGAGGTCACCAA
GCAATTGCAAGCACGGTTCTTGCCAAACCCTGTTATCATAAAGAAACGCATAGAATCTCT
GATCGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGAAAATTATATCGCTATCTTGC
ATAAAAGGCCACCATGTGAATGCTAAGATATTTCATGAGCAGGTGGCTTCCTTGTATTCC
TGTAAACATTTCCCCTTGTGCTTGAGTTCAGTTTTATTTTGTTGGGCACTGTCCACTGAA
ATCAGTAGCAGTTGTTAAATTTGGTTATCGATCGATTCAAATGTGGACTTTACCCCAATC
CCTGCAACCTGTCTACTAGACAAGCATTCATGTTATGCACACTTTTGTGCATTCCAAAAA
AAAAAAA

Homology of Contig U35_6720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51180.1	737	4e-109	protein\|cullin, putative, expressed
Brachypodium v1_2	Bradi3g59330.1	737	7e-111
Arabidopsis v10	AT1G26830.1	732	6e-96	\| Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 \| cullin 3 \| chr1:9296063-9298374 FORWARD LENGTH=732