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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41960_PI390587928Hv_44K_v2ATAACGTACAAGCCAGACCAGGAGAAGGAAGAGTCTTCGAATTGGACGGAAGAAATCTTC422GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3050.5080.9151.2741.9682.011
Raw 4.56312.44321.99140.47226.29330.234



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37354923562e-24684 - 74310060 / 60plus ABC04844 ABC14532 ABC17612
MLOCMLOC_17049.117292e-24885 - 94410060 / 60plus ABC04844 ABC14532 ABC17612
JLOC1JLOC1_11772.119158e-25828 - 88710060 / 60plus
Harvest21ABC145327063e-25248 - 30710060 / 60plusABC14532
Harvest35U35_67308813e-25423 - 48210060 / 60plus



Contig Sequence (881 bp)

>U35_6730 881 Hv_44K_v2
GCACGGTGTACCGGCTGCAGTTCATCACCATGGACCCCGGCGCCCTGTTCCTGCCCGTGC
AGCTGCACGCCGACGCTGTCTTCTACGTGCACAGCGGGCGGGGCAAGGTGACCTACATCC
AAGAAGGGGGCAGCGAGACGAGCTCGCTGGAAGTGCAGCGAGGAGACGTGTACAACTTGG
AGCAGGGCAGCATCCTGTACATCCAGAGCTACCCCAACGCCACCAGAGAGCGCCTTCGGG
TCTACGCCATTTTCACCAGCAACGCCATCAACTGCGACGACCCATCGCATCCCAAGTCAG
AAGCATACTCGAGCGTCAGCAATCTACTGAGAGGATTCGATGTGAAGATTCTTCGACAGG
GATTTGGGGTTTCCTCTGGAGTGGTCGAGGCGATCACATCGGCGAAGAGCCCACAGTCGA
TCATAACGTACAAGCCAGACCAGGAGAAGGAAGAGTCTTCGAATTGGACGGAAGAAATCT
TCGACGCGCTGTGGGGAGACGACTCCCCACTGAACAAGAAGAAGAAGAAGGATAAGCACA
AGAAGAAGGACAAGAAGGACGACAAGTCCAAGAGCAAGACTTTCAACTTCTACTCCGGCG
AGCCGGACGTCAAGAACTGCTTTGGATGGAGCAAAACCATGACCAACAAGGACCTCCAGA
ATCTCAGGGGGTCCGACATTGGCATGTTCATGGTGAACCTGACCACGGGGTCGATGATGG
GACCTCACTGGAACCCGAAGGCCACGGAGATCGCTATCGTAACACACGGGTCAGGGATCG
TGCAGGTGGTATGCCCGAGCATCCCCTCGGGCGCCGGAGGCGATCACGGCCACCACGACG
AGGGCGGTCGCGGGGGCGGCGATCACGGCCACCACGACGAC



Homology of Contig U35_6730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g10110.16572e-122protein|cupin domain containing protein, expressed
Brachypodium v1_2Bradi1g71350.17021e-136
Arabidopsis v10None