barSeed - Barley Seed Development Database

Probe CUST_4194_PI390587928

Source Contig U35_29194

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4194_PI390587928	Hv_44K_v2	ATCCAAAATCCGGGAGTGGTCAAAGGGTAAAGAAGGAAATATTCGGTCATTGCTTTCTAC	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361010	2232	2e-24	1672 - 1731	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	AK364448	2188	2e-24	1696 - 1755	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.8	1659	2e-24	1232 - 1291	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.6	1607	2e-24	1172 - 1231	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.3	1814	2e-24	1326 - 1385	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.4	1813	2e-24	1324 - 1383	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.7	1701	2e-24	1193 - 1252	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.5	1586	2e-24	1163 - 1222	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.1	1885	2e-24	1350 - 1409	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
MLOC	MLOC_55435.2	1906	2e-24	1371 - 1430	100	60 / 60	plus	ABC10826 ABC14412 ABC14413
JLOC1	JLOC1_35760.2	1972	8e-25	1290 - 1349	100	60 / 60	plus
JLOC1	JLOC1_35760.1	1951	8e-25	1269 - 1328	100	60 / 60	plus
Harvest21	ABC14413	937	3e-25	415 - 474	100	60 / 60	minus	ABC14413
Harvest21	ABC14412	1399	3e-25	970 - 1029	100	60 / 60	plus	ABC14412
Harvest35	U35_29194	557	3e-25	464 - 523	100	60 / 60	plus
Harvest35	U35_6177	1527	3e-25	970 - 1029	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_29194 557 Hv_44K_v2
GCATCAAAATCTTCAGTCCTGAGGTTTCACCAAAGCGAAAAGCGGCAGTTGAGGCTCAAG
ATCACTCCAGTGGAAAAAATGGAAGCAAATGTGGAGTTGAAGATAAATTTAGCATCTCGG
ATTTGGAGACTGGTGAGGATATTAAGACGGATAAAACAAACAACCAGAATGCATTTTCCT
CTGCAGCTGCTCAAATGAATGACGTACAAGGTAGGATGGAGAAACCCATCCTTACAGTCG
ATGATGAAATGCTCACAAGAACAGGCAAACTCTCGGGAAAGGAAGATGTTAAACCTCCAT
CTTCTGATAAGTTGTTCCATGTTGAAACAGAGGAAAAGGTGCGCGACACAACAAGTCGTG
AAGAAAGTCACATGGAAAATCTTGAAGAGTGCGTGGTTGAACATTTGGACGAAAATCAGA
TTCTTCAGGATGACAATGAAAAGGAACAAATAAAGATATCTCAATCCAAAATCCGGGAGT
GGTCAAAGGGTAAAGAAGGAAATATTCGGTCATTGCTTTCTACACTGNCATATGTTCTCT
GGCCTGAAAGTGGATGG

Homology of Contig U35_29194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g71310.1	627	2e-77
Arabidopsis v10	None