barSeed - Barley Seed Development Database

Probe CUST_41942_PI390587928

Source Contig U35_6749

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41942_PI390587928	Hv_44K_v2	CAGAACAACCGTGCAGTGTCAGATTCCACAAACTGCAGCCATTATAGTTTTTCATCCAAA	1401	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.638	2.308	1.167	0.829	0.340	0.591
Raw	62.358	136.883	61.097	66.252	9.646	18.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54858.1	2758	2e-24	74 - 133	100	60 / 60	minus	ABC23547 ABC24266 ABC29139
MLOC	MLOC_54858.2	2257	2e-24	74 - 133	100	60 / 60	minus	ABC23547 ABC24266 ABC29139
MLOC	MLOC_54858.3	2384	2e-24	45 - 104	100	60 / 60	minus	ABC23547 ABC24266 ABC29139
MLOC	AK362651	1447	7e-23	1391 - 1447	100	57 / 57	plus	ABC23547 ABC24266
JLOC1	JLOC1_35335.2	2176	8e-25	2041 - 2100	100	60 / 60	plus
JLOC1	JLOC1_35335.1	1984	8e-25	1849 - 1908	100	60 / 60	plus
Harvest35	U35_6749	1475	3e-25	1402 - 1461	100	60 / 60	plus

Contig Sequence (1475 bp)

>U35_6749 1475 Hv_44K_v2
AGGCTCCGGCAATGAAAGCTTCCCCCACCTTCTTCTTGACCATGGCCACTCCTCGTCTCC
CCTGTCTCTTCGCTCTCCTCCTCCTCTCCACCGCCTCGGCGGAGTGCGCGCAGGAGCTAC
TTCGGCGCGCCGAGGGCGAGCGAGAGTGGATTATCAGCGTGCGCCGGCGCATCCACGCCC
ACCCGGAACTCGCGTTCCATGAGCACCGCACCAGCGCCCTCGTCCGCGAGGAGATCGAGC
AGCTAGGGGTTACCGCCCGCGCCGTTGCCGGCACCGGTGTCGTCGCTGATGTCGGCTCGG
GCATGCCCCCGATCGTCGCCCTCCGCGCCGACATGGACGCCCTACCCATCCAGGAATTGG
TGGAGTGGGAGCACAAGAGCAGAGTTGATGGCGTAATGCATGCCTGTGGTCATGATGTGC
ACACAGCGATGCTCCTGGGAGCGGCAAAGTTGCTTCATGAGCGCAAGGATCAGCTTAAGG
GAACGGTGAGACTGCTTTTTCAACCTGCTGAGGAGGGTGGTGCCGGTGCATCTCATATGG
TAAAAGAAGGTGTTCTAGATGGTGTTGAGGCTATATTCGCCATGCATGTCGATTGTCAGA
AGCCGACAGGCTCAATAGCTGCTCACGCAGGACCAACACATGCAGCCGTGTGTTTCTACG
TAGTGAAAATAGAAGGTAAAACCGGGAAGGCTGAAACACCACACTTGAATGTGGATCCTG
TTGCTGCTGCGGCATTTACCATCCTGGCCCTGCAACAGCTCACCTCGAGAGAAGACGACC
CTCTTCACAGCCAAGTGCTCTCTGTTACCTATATTAAAGCTGGGAATTCTACTGATACCA
CACCTCCAGTTGTTGAATTCGGAGGTACTTTGAGGAGCCTTACTACTGAAGGACTTTATC
GACTAGAGAAAAGGCTTAAGGAGGTAGTAGAAGGGCAGGCAGCTGTGCATAGATGCAAGG
GGGTTACGGAGATACTGGGGGCTCCCTCCTACCCGATGTATCCCGCCGTCGTGAATGATG
AGAGGCTGCATCGCCACATAGAGAATGTGGGCAGAAGATTGCTTGGCCCGGATAATGTGA
AGCCCGGGGAGAAGATCATGGCAGGGGAAGACTTTGCTTTCTACCAACAGTCAGTTCCTG
GCGTCATCTTTGGTATCGGCATTAGAAACGAGAAAGTCGGTGCGGTGCACTGTTATCACA
ACCCGCATTTCTTCGTGGACGAGGATGTCCTTCCCATTGGAGCTGCGTTGCACACTGCTA
CTGCAGAAATGTATCTCTCTGGGTGCTCCACTCAAAATGAAGTTGGAAGGGTGTGTTCAC
AGGAAGAGCAACTCTAGCGGATTCCATAAGAAGAGAGTGTACAAAACAGTCTTAAAGGGC
CTTTTATTTTTTTAAAGGCTCCAGAACAACCGTGCAGTGTCAGATTCCACAAACTGCAGC
CATTATAGTTTTTCATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44110.1	427	0.0	protein\|hydrolase, putative, expressed
Brachypodium v1_2	Bradi5g16000.1	428	0.0
Arabidopsis v10	AT5G54140.1	428	2e-149	\| Symbols: ILL3 \| IAA-leucine-resistant (ILR1)-like 3 \| chr5:21965833-21967834 FORWARD LENGTH=428