barSeed - Barley Seed Development Database

Probe CUST_41883_PI390587928

Source Contig U35_1104

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41883_PI390587928	Hv_44K_v2	GTTAATTACCTAAACTGTTACATGTAAGTGATGGGTTTCAACATTCAATAATGCCACCGG	1276	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	0.954	0.677	0.840	1.265	1.126
Raw	2.673	5.361	2.460	7.785	2.874	2.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78140.1	3037	7e-23	2667 - 2726	98	59 / 60	plus	ABC01878 ABC03059
MLOC	MLOC_79770.1	2235	3e-21	799 - 852	100	54 / 54	minus	ABC01878 ABC03059
JLOC1	JLOC1_52082.1	2761	4e-23	2666 - 2725	98	59 / 60	plus
JLOC1	JLOC1_53122.1	1585	2e-21	1384 - 1437	100	54 / 54	plus
Harvest21	ABC03059	1382	3e-25	1277 - 1336	100	60 / 60	plus	ABC03059
Harvest35	U35_1104	1382	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1382 bp)

>U35_1104 1382 Hv_44K_v2
CGTCTTCTTCTCTCAGATCTAAGCAAAAAGTCAGACGAACCACAACCACCGCCATGGCAA
CCACCCTCACCACCGACCTCCGCCTCTCCATCGCGCACCAAACCCGATTCGGCCTCCGCC
TCGCCTCCGCCATCTCCTCCGACCCCGAGTCTGCTGCCACCAACGTTGCTTTCTCCCCGG
TCTCGCTCCACGTCGCGCTCAGCCTCGTTGCTGCCGGCGCAAGGGGTGCCACCCGCGACC
AGCTCGTAGCTGTACTCGGGGGCGGTGGTGCAGGAGAGGCCGAGGCACTCCAATCACTTG
CCGAGCAGGTGGTGCAGTTCGTGCTCGCCGACGCGTCCATCAACTCCGGCCCGCGCATCG
CCTTCGCCAACGGTGTTTTCGTCGACGCGTCGCTCTCGCTCAAGCCATCCTTCCAGGAGC
TCGCCGTGTGCAACTACAAATCTGAGGTCCAGTCCGTGGACTTCAAGACTAAGGCTCCTG
AAGCTGCTAGTCAAGTGAATTCCTGGGTAAAGAATGTCACCGCAGGTCTCATCGAAGAGA
TCCTCCCCGCGGGGTCTATTGACAATACAACTAGACTAGTTCTTGGTAATGCACTTTACT
TCAAAGGACTTTGGACCAAGAAGTTTGATGAATCTAAGACAAAGTATGACGATTTCCACC
TTCTTAATGGGAGCACTGTTCAAACACCATTCATGTCTAGTACAAATAAGCAGTACCTTT
CATCTTCGGATGGCTTGAAGGTACTTAAGCTTCCATACCAACATGGTGGGGACAACAGGC
AGTTCTCCATGTACATTCTTCTTCCTGAAGCACATGACGGTCTCTCAAGATTGGCACAAA
AGTTGAGCACTGAACCAGATTTTTTGGAGAACCGTATCCCAACGAAGGAGGTTGAAGTCG
GACAGTTCATGCTCCCAAAGTTCAAGATATCTTTTGGATTTGAAGCAAACAAATTGCTCG
AAACTTTGGGTCTTCAGCTGCCATTCAGTTTGGAGGCCAATCTTTCGGAGATGGTGAATT
CTCCCAAGGGCCTATACATCTCATCTGTTTTCCACAAAACGTTTGTTGAAGTAGACGAAG
AAGGAACTAAGGCAGCAGCAGCAACCGGCGATGTGATTGTAGAACGGTCACTACCCATAA
GGATGGATTTCGTTGCTAATCACCCTTTCCTCTTCCTTATTCGAGAAGACATCGCCGGTG
TAGTGCTCTTCATTGGTCATGTTGCCAATCCCGTCGTGTCTTCATAGTATGTTTACCCTA
AATCAGTGTCTTGTAAGTTAATTACCTAAACTGTTACATGTAAGTGATGGGTTTCAACAT
TCAATAATGCCACCGGTATAATAAATTAAATAAATTGTTTTTAAGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_1104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g41438.1	406	2e-162	protein\|serpin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g14730.1	402	2e-180
Arabidopsis v10	AT1G47710.1	391	2e-116	Serine protease inhibitor (SERPIN) family protein \| chr1:17558271-17560061 FORWARD LENGTH=391