barSeed - Barley Seed Development Database

Probe CUST_41882_PI390587928

Source Contig U35_1105

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41882_PI390587928	Hv_44K_v2	AATAAGCAGTACCTTTCATCTTCGGACGGCTTGAAGGTACTTAAGCTTCCATACCAACAT	695	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.615	1.723	2.533
Raw	3.532	3.234	2.826	4.284	6.108	10.717

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78140.1	3037	7e-23	2095 - 2154	98	59 / 60	plus	ABC01878 ABC03059
MLOC	MLOC_79770.1	2235	3e-21	1365 - 1424	97	58 / 60	minus	ABC01878 ABC03059
JLOC1	JLOC1_52082.1	2761	4e-23	2094 - 2153	98	59 / 60	plus
JLOC1	JLOC1_53122.1	1585	2e-21	812 - 871	97	58 / 60	plus
Harvest21	ABC03061	817	3e-25	696 - 755	100	60 / 60	plus
Harvest21	ABC03059	1382	1e-23	705 - 764	98	59 / 60	plus	ABC03059
Harvest21	ABC03060	618	6e-22	250 - 309	97	58 / 60	plus
Harvest35	U35_1105	817	3e-25	696 - 755	100	60 / 60	plus
Harvest35	U35_1104	1382	1e-23	705 - 764	98	59 / 60	plus

Contig Sequence (817 bp)

>U35_1105 817 Hv_44K_v2
CTCTCAAATCTAACTAAAAAGTCAGACGAACCACAACCACCGCCATGGCAACCACCCTTG
CCACCGACCTCCGCCTCTCCATCGCGCACCAAACCCGATTCGGCCTCCGCCTCGCCTCCG
GCATCTCCTCCGACCGCGAGTCTGCTGCCACCAACGTTGCTTTCTCCCCGGTCTCGCTCC
ACGTCGCGCTCAGCCTCGTTGCTGCCGGCGCAAGGGGTGCCACCCGCGAGCAGCTCCTAG
CTGTACTCGGGGGCGGTGGTGCAGGAGAGGCCGAGGCACTCCAATCACTTGCCGAGCAGG
TGGTGCAGTTCGTGCTCGCCGACGCGTCCATCAACTCCGGCCTGCGCGTCGCCTTCGCCA
ACGGCGTTTTCGTCGATGCGTCGCTCTCGCTAAAGCCGTCCTTCCAGAAGCTCGCGGTGT
GCAACTACAAATCTGAGGTCCAGTCCGTGGACTTCAAGGCTAAGGCTCCTGAAGCTGCTA
GTCAAGTGAATTCCTGGGTAAAGAATGTCACCGCGGGTCTCATCGAAGAGATCCTCCCCG
CGGGGTCTATTGACGATACAACTAGACTAGTTCTTGGTAATGCACTTTACTTCAAAGGAC
TTTGGACCAAGAAGTTTGATGAATCTAAGACAAAGTATGACGATTTCCACCTTCTCAATG
GGAGCACTGTTCAAACACCATTCATGTCTAGTACAAATAAGCAGTACCTTTCATCTTCGG
ACGGCTTGAAGGTACTTAAGCTTCCATACCAACATGGTGGGGACAACAGGCAGTTCTCCA
TGTACATTCTTCTTCCTGAAGCACGCGACGGTCTCTC

Homology of Contig U35_1105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g41438.1	406	1e-93	protein\|serpin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g14730.1	402	1e-106
Arabidopsis v10	AT1G47710.1	391	4e-65	Serine protease inhibitor (SERPIN) family protein \| chr1:17558271-17560061 FORWARD LENGTH=391