- Probe CUST_41824_PI390587928
- Source Contig U35_27999
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41824_PI390587928 | Hv_44K_v2 | GAAAAGCAAGCAGTGCCGCCCAGATGTGATCACATTCAACATACTCATAGATTCGTATGG | 493 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.686 | 0.812 | 1.535 | 2.546 | 1.339 | 1.041 |
| Raw | 9.829 | 16.388 | 29.967 | 75.224 | 14.692 | 12.327 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357315 | 1937 | 2e-24 | 886 - 945 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4373.1 | 3998 | 2e-24 | 458 - 517 | 100 | 60 / 60 | plus | ABC21521 |
| MLOC | MLOC_4372.1 | 2574 | 2e-24 | 563 - 622 | 100 | 60 / 60 | plus | ABC21521 |
| MLOC | MLOC_4372.2 | 1607 | 2e-24 | 554 - 613 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4372.3 | 2055 | 2e-24 | 844 - 903 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4372.4 | 2312 | 2e-24 | 560 - 619 | 100 | 60 / 60 | plus | ABC21521 |
| JLOC1 | JLOC1_2709.3 | 3985 | 8e-25 | 3477 - 3536 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_2709.2 | 3876 | 8e-25 | 3368 - 3427 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_2709.1 | 2521 | 8e-25 | 2013 - 2072 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_2708.2 | 1806 | 8e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2708.1 | 1815 | 8e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22940 | 557 | 3e-25 | 494 - 553 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27999 | 557 | 3e-25 | 494 - 553 | 100 | 60 / 60 | plus |
Contig Sequence (557 bp)
>U35_27999 557 Hv_44K_v2 GGGAGCTCGGCCGCCGCGACGGCTGGGTCCAGTGCCTCGAGATTTTCAGGTGGATGCAGA AGCAGCGGTGGTACGTCGCTGACAACGGCATCTATTCCAAGCTGATATCCGTGATGGGAA GGAAGGGGCAGATACGGATGGCCATGTGGCTCTTCTCCCAGATGCGCAACAGCGGGTGCA AGCCGGACACTTCGGTATACAATTCCCTCATCGGTGCGCACCTGCATTCACGGGACAAGA GTAAGGCTTTGGTGAAAGCTCTCGGCTATTTTGACAAGATGAAGGGCATGGAGAGATGCC AGCCTAATATCGTGACGTACAACATCCTCTTGAGGGCGTGTGCTCGGGCTAGTGACACGA AGCAGGTGGACATCCTTTTCAAGGATCTCGATGAAAGCATAGTCTCTCCAGATATCTACA CATATAATGGAGTGATCGACGGGTATGGGAAGAATGGCATGATTACAGAGATGGAGTCTG TATTGGTGCGGATGAAAAGCAAGCAGTGCCGCCCAGATGTGATCACATTCAACATACTCA TAGATTCGTATGGGCGA
Homology of Contig U35_27999 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g51480.1 | 496 | 3e-119 | protein|PPR repeat domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g59120.1 | 520 | 3e-124 | |
| Arabidopsis v10 | AT4G39620.1 | 563 | 8e-100 | | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18395294-18397578 FORWARD LENGTH=563 |