barSeed - Barley Seed Development Database

Probe CUST_41721_PI390587928

Source Contig U35_12061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41721_PI390587928	Hv_44K_v2	CTGGAACTTATTTTCCAAAAAACCGGTCATCACAAGTGTCTCACACTGAAATAAAGATAA	755	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249188.1	1991	2e-24	832 - 891	100	60 / 60	plus	ABC20255
MLOC	AK372258	2777	2e-24	2703 - 2762	100	60 / 60	plus	ABC16591 ABC17862 ABC20255 ABC24039
MLOC	MLOC_20481.1	1159	2e-24	820 - 879	100	60 / 60	minus	ABC20255
MLOC	AK249315.1	2848	7e-23	1616 - 1675	98	59 / 60	plus	ABC16591 ABC17862 ABC20255 ABC24039
JLOC1	JLOC1_14194.1	1159	8e-25	820 - 879	100	60 / 60	minus
Harvest35	U35_12061	849	3e-25	756 - 815	100	60 / 60	plus

Contig Sequence (849 bp)

>U35_12061 849 Hv_44K_v2
GTCGCTTAGACGCCCGACTGTGGTAGCTGTTATTACTTTGGTATGAGCCCTTTATGTGGT
GTCGCTTAGATGCCTGACTGTGGCACACATGCTATTACTTATTCATCGTTATCTCATATA
AGCCCTTTTTGTGGTGTTGCTCCAGACGCCCAACCCTGGCATGTTTAGTAATATTCCATT
GACAAGTCCCTTTATGTAATGTCGCTAAGACGCCTGACTGTGGCTTGGGTTACTTGTCCG
TCTGAGGTGTCTATTTAGACGCCCGATCAGCAAGCTTATAATTGATTATTACCCTTCTCT
CCTTGTTTATATAACATTGGCAGAAATGGTTTATCTGCATGAATACATGCGTGAATTAAT
TCTCACGACATGATAGGTTTATTAAGTGAATTCTACATGAATACCACCTACTTTAACTTA
TTTGTTTTCTTGATGTTTGCGAGTACATTCAAAGTACTCACTGGCTTGTCCCTGGCTATT
GTCTTGGCCAGATTTCTTTCAGAGAGGAGCATGATGTCGTCAACCCCAGAACCTAGGAGT
CAAGGATACAACCTTGTGAGATGGGAATTTATCCAAGTCATCTGTTCCTCTGGGAATGGA
GTCCCATGGGCACTGGAGATTCCTCGAGTTGCTTCCGTCGTCAGCCTTAGACTTTAGTCC
AAACGAGTGGATCTTCATGGTCTTATAACCCAGATTTTGTGTTTTTCTTGGGATTTCTTG
TAGTCCTGGGGCTGGTGAACACAAAGGCCTGTTTTCTGGAACTTATTTTCCAAAAAACCG
GTCATCACAAGTGTCTCACACTGAAATAAAGATAAATGAAAATTTGGTAGAGAAAAAAAA
AAAAAAAAA

Homology of Contig U35_12061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None