- Probe CUST_41678_PI390587928
- Source Contig U35_13197
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41678_PI390587928 | Hv_44K_v2 | GAAGAAAGCTCTCCTTCTTGGTGATGCCATTTCAGATCTGCCGAAGGTTGACAACTATCA | 473 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.011 | 1.326 | 2.666 | 2.266 | 0.707 | 0.481 |
| Raw | 214.181 | 436.376 | 764.493 | 1060.325 | 111.301 | 84.311 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11952.3 | 2528 | 2e-24 | 876 - 935 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| MLOC | MLOC_11952.4 | 2486 | 2e-24 | 912 - 971 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| MLOC | MLOC_11952.5 | 1275 | 2e-24 | 677 - 736 | 100 | 60 / 60 | minus | ABC15470 |
| MLOC | MLOC_11952.1 | 2570 | 2e-24 | 1003 - 1062 | 100 | 60 / 60 | minus | ABC15470 ABC48549 |
| JLOC1 | JLOC1_7976.1 | 2615 | 8e-25 | 1513 - 1572 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25908 | 541 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13197 | 539 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_13197 539 Hv_44K_v2 GAAGGGTACAAGCGAAACATTCTACCCCAGCCTGGTCAGGTTGATGTTATTTGTGGTGGC CCACCCTGCCAAGGGATAAGTGGGTTCAACCGGTTTAGAAACCGTGATAACCCTTTACAA GACGAGAAAAATCAACAAATGGTTACCTATATGGACATTGTCTCTTACCTGCAACCAAAG TTTGTTCTGATGGAGAACGTCGTGGACATTCTGAAATTTGCTGATGGTTATCTCGGTAGA TACGCATTGAGCCGTCTCGTGTCTTTGAACTACCAAGCCCGCCTTGGGATGATGGTAGCT GGTTGCTATGGGCTTCCTCAGTTCAGAATGCGGGTGTTCCTTTGGGGATCTCTTCCTACA ATGGTCCTCCCAAAGTATCCTCTTCCTACTCATGATGTAGTTGTTCGTGGTGGTGCTCCA AATGCTTTCTCGCAAAGCATTGTTGCGTATGATGAGACACAAAGGCCAATTTTGAAGAAA GCTCTCCTTCTTGGTGATGCCATTTCAGATCTGCCGAAGGTTGACAACTATCAACCACA
Homology of Contig U35_13197 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g12570.1 | 1788 | 5e-88 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g21450.2 | 895 | 8e-112 | |
| Arabidopsis v10 | AT4G19020.1 | 1295 | 3e-74 | | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-10420936 FORWARD LENGTH=1295 |