barSeed - Barley Seed Development Database

Probe CUST_41669_PI390587928

Source Contig U35_25173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41669_PI390587928	Hv_44K_v2	TAGATGAATTGAAAACATCATCCACCTCCTTCACCGTTGGATTGTGACACAAACAGCCGG	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75089.1	2165	2e-24	156 - 215	100	60 / 60	minus	ABC11664 ABC14311 ABC21737
MLOC	MLOC_75089.2	2183	2e-24	156 - 215	100	60 / 60	minus	ABC11664 ABC14311 ABC21737
JLOC1	JLOC1_50076.2	2142	8e-25	1931 - 1990	100	60 / 60	plus
JLOC1	JLOC1_50076.1	2054	8e-25	1843 - 1902	100	60 / 60	plus
Harvest21	ABC21737	466	3e-25	378 - 437	100	60 / 60	plus	ABC21737
Harvest35	U35_25173	466	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_25173 466 Hv_44K_v2
TGGGGTTGGGCCTGGAGCGCGAGGCCATGCATTACTATGGAGCGCAGGCCATGAAGGTGA
TGTTGCAACACGTTGAGTACTTCATCGCCGCCGAGGAGAGCACGCTCTACGAGAAGTACG
GCAAGGACCACCCGGCGGTACGTGACCCGGACTCGATACACAAGCAGGGATGGCAGGGTG
CAAAGCAGTACTTCTGGGCGGAGCAGGACATTAGACTCAACGTCACCAGATTTGCTCCCA
CGCTGCATCAGATACTTCAGACGATCCGGGAATAGAAGAAGCAGATGTGGGATATATACC
ACTAGCTAGTACTCCCTTTGTCTTAGTGTTAAAATCGCCTTATGTTATTTATATGGGGGT
TGCTACGCATCCGCCGGTAGATGAATTGAAAACATCATCCACCTCCTTCACCGTTGGATT
GTGACACAAACAGCCGGCAGATCTCTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None