barSeed - Barley Seed Development Database

Probe CUST_41640_PI390587928

Source Contig U35_25187

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41640_PI390587928	Hv_44K_v2	TCGTTGGTGACCTTGTTGCGCTCCTCGACACCTTAGGGCTTGCAAAGGTGTTTGTGGTGG	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358796	1276	2e-24	346 - 405	100	60 / 60	plus	ABC05553
Harvest35	U35_25187	471	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_25187 471 Hv_44K_v2
AACGCACAAACACACACAAAGACACATACACCACAGACAGACAGAGAGAAAGAGAGAGAG
GAGGGTAGAGAGTTTTGGGTGACCATGGACATGGAGGGCGTGGAAATCAGACACCAGAAT
GTGGAGGTGAACGGCATATCGATGCATGTGGCGGAAGCCGGGCCAGAGGTGGACGCCAAG
GGGGCGGTGTTGTTCCTGCACGGCTTCCCGGAGCTGTGGTACTCGTGGCGCCATCAGATG
GATCACTTGGCGGCTCGTGGTTACCGCTGCATCGCGCCTGACCTCCGTGGCTATGGTGGC
ACCACTGCTCCACCCGATGTTGCGTCTTACACCGCATTTCACATCGTTGGTGACCTTGTT
GCGCTCCTCGACACCTTAGGGCTTGCAAAGGTGTTTGTGGTGGGGCACGACTGGNGTGCG
ATCATCGCTTGGTACCTTTGCTTGTTTCGTCCGGATCGTGTGACGGCACTT

Homology of Contig U35_25187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61360.1	339	2e-68	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi4g10397.1	326	6e-77
Arabidopsis v10	AT4G15955.3	304	1e-51	alpha/beta-Hydrolases superfamily protein \| chr4:9043872-9045544 REVERSE LENGTH=304