barSeed - Barley Seed Development Database

Probe CUST_41623_PI390587928

Source Contig U35_25190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41623_PI390587928	Hv_44K_v2	GCGAATAGCTCCACATTTGGAAATAAGACCGTGTTCTCACAGGAGAAATACAAACTGAAG	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68945.4	2144	2e-24	504 - 563	100	60 / 60	plus	ABC12353
MLOC	MLOC_68945.3	2227	2e-24	464 - 523	100	60 / 60	plus	ABC12353
MLOC	MLOC_68945.2	2000	2e-24	469 - 528	100	60 / 60	plus	ABC12353
MLOC	MLOC_68945.1	1569	2e-24	469 - 528	100	60 / 60	plus	None
MLOC	MLOC_48103.2	281	2e-24	53 - 112	100	60 / 60	minus	None
MLOC	MLOC_48103.1	364	2e-24	63 - 122	100	60 / 60	minus	None
MLOC	MLOC_41510.1	192	3e-21	46 - 105	97	58 / 60	plus	None
MLOC	MLOC_41510.2	497	3e-21	46 - 105	97	58 / 60	plus	None
JLOC1	JLOC1_45663.2	2159	8e-25	469 - 528	100	60 / 60	plus
JLOC1	JLOC1_45663.1	2059	8e-25	469 - 528	100	60 / 60	plus
JLOC1	JLOC1_27032.1	300	2e-21	43 - 102	97	58 / 60	plus
Harvest21	ABC21341	513	1e-24	455 - 513	100	59 / 59	plus
Harvest35	U35_25190	514	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (514 bp)

>U35_25190 514 Hv_44K_v2
CCCTCCCCAACTCCCCAACTCGGCGACTCCAATGGCGCCGCCGCCGCCGCCGCCGCCGCA
GACGCCGACGCCGGTGATAGCGCGGGAGGCGTGGGAGGGCTGCAGCGTGCTCCTCGACAT
CAACGACGGCGACCGCCTCGCCTTCTTCCGCCTCACCCCCGCCGCGACGGTGAAGATAGG
GGACAAGAGCTGCTCGCTGCAGCCGCTGCTCGGCCGCCCCTTCGGCTCCCTCTTCCGCGT
CGGGCCCTCCGGCCTCGTCCCCTGCGCCGCCACCGACGCGCCGTCTCAAGATGATAAGCA
GCGAGACGGCGGCGCCGACGGCCAGGCGCAGGACGAGACCAGGGACAATAGGTCCCTGGT
TGACAATAACACGGCGCAGACGCTGTCGAGCGAGGACATCGAGGCGATGAAACGGGAGGG
CGCGAGCGGCGACGCGATTGTGGAGGCTTTGATAGCGAATAGCTCCACATTTGGAAATAA
GACCGTGTTCTCACAGGAGAAATACAAACTGAAG

Homology of Contig U35_25190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02150.2	476	4e-76	protein\|tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g01890.1	476	3e-76
Arabidopsis v10	None