barSeed - Barley Seed Development Database

Probe CUST_415_PI415269222

Source Contig TA33569_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_415_PI415269222	Hv_44K_v2	AGAACGACAAGTACAAGGTGCTCATGTGCACCGACCTCTCGAAGTCGAGCACCAGAGACG	1470	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367512	2547	2e-24	1793 - 1852	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.6	1617	2e-24	1275 - 1334	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.5	3698	2e-24	3356 - 3415	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.2	1704	2e-24	1362 - 1421	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.3	3784	2e-24	3442 - 3501	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.4	2087	2e-24	1320 - 1379	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.1	2151	2e-24	1363 - 1422	100	60 / 60	plus	ABC04470
MLOC	MLOC_57850.7	3610	2e-24	3352 - 3411	100	60 / 60	plus	ABC04470
JLOC1	JLOC1_37568.2	4398	8e-25	3426 - 3485	100	60 / 60	plus
JLOC1	JLOC1_37568.1	2335	8e-25	1363 - 1422	100	60 / 60	plus
Harvest21	ABC04470	2254	3e-25	1474 - 1533	100	60 / 60	plus	ABC04470
Harvest21	ABC04473	750	1e-23	689 - 749	98	60 / 61	minus
Harvest35	U35_15818	2254	3e-25	1475 - 1534	100	60 / 60	plus
Harvest35	U35_15819	774	1e-23	2 - 62	98	60 / 61	plus

Contig Sequence (1923 bp)

>TA33569_4513 1923 Hv_44K_v2
TTCACCCGAGCTGGAGAGCAGTAGCTGCTATATACTACTACTACCACGAATACATTTTGG
CCATGGCCCGGCTCTCACTCGCGGCGTGCGCGGTCGCCTTCCACCTATGCCTTCTTGGCT
TCTTGCCCGGCTTCGCCCGCTGGCTCTTCGACGAGGCGGCGCCGGCGGTGAGCGCCGCCC
GCCGTGGGGGCGTCAGGACCAGGTCCGCCTACCACTTCCAGCCCGCCAAGAACTGGCAGA
ACGATCCCAATGGTCCCATGTACCACAACGGATTGGACCACTTCTTCTACCAGTACAACC
CCGACGGCGTGACGTGGGGGAACGGCAACCTGTCGTGGGGACACTCCGTCTCCCTGGACC
TCGTGAACTGGTTCGCGCTCGACACAGCGCTTGAGCCCAGCCGGTCGTTCGACGCCAACG
GCTGCTGGTCAGGCTCCGCCACCATCCTCCCCGACGGCAGCCCCGTCATGCTCTACACCG
GCATCGACGCGCGTGGTGACCAGGTCCAGAACGTCGCCTACCCCAAGAACGCCTCTGACC
CGCTCCTCGTGGAATGGGTGAAGCCCGAGTACAACCCCGTCATCCCTGTCCCAGCTGACA
TCAAGCGCGACGACTTCCGTGACCCTTCCACGGCGTGGCTCGGCGCCGATGGCCAGTGGC
GCATCGCCGTCGCGGCCCGTGTCCATGACGTTGGGGGTGCCACGCTCATCTACCGGAGCA
AGGACTTCCTGCGCTGGGAACGGAATGCTGACCCGCTTTACTTGGCCCACGCCGCCGGCA
TGGTGGAGTGCCCGGACCTGTTCCCGGTGTCCGAGCCCGGAGTGGAGGTGGGGCTCCCGG
CGAGCGGCGCCGGGGCGAGGCACGTGCTGAAGATGAGTGTGATGGACACGGTCCAGGACT
ACTACGTTGTCGGGCGCTACGACGACACGGCGGACACCTTCGTGCCGGAGGACGACGGTG
ACTGCCGGAGCTGGCGCCGCCTCGACTACGGCCACGTGTACGCGTCCAAGTCCTTCTTCG
ACCCGAGCAAGAACCGGCGCGTGCTCTGGGGCTGGGCCAACGAGTCCGACAGCCTGGCCG
ACGACCTCGTCAGGGGATGGTCCGGTGTTCAGACTGTTCCGAGGAAGATATGGCTGGACG
AAGACGGCAAGCAGCTGCGGCAGTGGCCGATCGAGGAGATCGAGACGCTGAGGAACAAGC
GAGTGAACCTGCTGATACCTGAGGTCAACGCCGGCGGCGTGAACGAGATCATCGGCATCG
TGGGCGCGCAGGCAGACGTGGAGGTCATGTTCCAGATCCCTGCTCTGGAGCACGCCGACG
TCCTGGAGCCCAACTGGCTGCTGAACCCGCAGAGCCTGTGCGGCGAGAAGGGCGCGTCGG
TGCCGGGCAGCGTCGGCCCGTTCGGGCTGCTCGTCATGGCCTCCGGCGACATGCAGGAGC
ACACCGCCGTCTTCTTCCGGGTGTTCAGGCAGAACGACAAGTACAAGGTGCTCATGTGCA
CCGACCTCTCGAAGTCGAGCACCAGAGACGGCGTGTACAAGCCGCCGTACGGGGCCTTCG
TGGACATGGACATCGAGGCGCAAGGGGGCAGCATCTCGCTCAGAACACTGGTCGACCACT
CGGTGGTGGAGAGCTTCGGCGGCGGCGGCAGGACGTGCATCACGGCGAGGGTGTACCCGG
ACCACGTCGTGAACGGCAACAGCCACCTGTACGTGTTCAACAACGGCACCGGCGCCGTCA
AGGTGTCCAGCCTCGACGCGTGGGAGATGGCGACGGCGACCGTGAACGTGCTCCCCGACG
GGCTGATCGCGGCGAGCTCGGTGAGCGGAGCTCAAGCCTATTAGGATTCGGGAGCCGGGT
TTTCGCTCGGTGGATGGATGGATGGATGGATGGCCATTGGGAATTTTTCCGGCCGATTGG
ATT

Homology of Contig TA33569_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g08072.1	596	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi5g25270.1	620
Arabidopsis v10	AT1G55120.1	594	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594