barSeed - Barley Seed Development Database

Probe CUST_41564_PI390587928

Source Contig U35_49179

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41564_PI390587928	Hv_44K_v2	CTAAAGTATCCAAACATAAGGGTTAGATTGGAGCTAGTTGCATCTAACCCATGCAAAAAA	83	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16971.1	1151	7e-23	13 - 72	98	59 / 60	minus	ABC04260
JLOC1	JLOC1_47248.1	1598	8e-25	1416 - 1475	100	60 / 60	plus
JLOC1	JLOC1_11719.1	1170	4e-23	1088 - 1147	98	59 / 60	plus
JLOC1	JLOC1_19596.1	373	2e-21	31 - 90	97	58 / 60	plus
Harvest21	ABC04260	1485	3e-25	1361 - 1420	100	60 / 60	plus	ABC04260
Harvest35	U35_49179	441	3e-25	84 - 143	100	60 / 60	minus
Harvest35	U35_1107	1507	3e-25	1374 - 1433	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_49179 441 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGAAAAATATTTTTTAATGAACCTCATGAGAACTAGCTCCAA
TTAGCACCTCTTGGGTGGATAGTTTTTTTGCATGGGTTAGATGCAACTAGCTCCAATCTA
ACCCTTATGTTTGGATACTTTAGGGCTAGTTGAACCCAAACTAGCTCAAACTAACTCTAG
CTCATAGATCCAAACAGGGCCATTCTAGAGTGGAACATGGCCAGAACACACAACATGCGA
AGCAATTATTTCACCAGAAAATTCTGGAAATACACACACACCGACCCATGGAAATAACAA
GACCACGTATCACGACCCCACGTGGCCGGTGACCGCTGCGTGTCTACGTCTCGGAGCACT
AAGCGGCGGCGCCCAGCTGGCTGCCGGCGACGTCGATGACGAAGCGGTACCTCACGTCGT
TCTTCTCCAGCCGCTCGACCG

Homology of Contig U35_49179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None