barSeed - Barley Seed Development Database

Probe CUST_41540_PI390587928

Source Contig U35_700

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41540_PI390587928	Hv_44K_v2	TTCCTAGACCTACCTTTCTACACCTGAGCTTATATACTTCTTGTGTGAACAGTAATGAAT	808	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.579	2.535	2.899	3.032	2.720	2.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63125.1	1282	2e-24	1144 - 1203	100	60 / 60	plus	ABC02208 ABC02209 ABC02213 ABC02214
MLOC	MLOC_63125.2	767	2e-24	629 - 688	100	60 / 60	plus	ABC02208 ABC02213
JLOC1	JLOC1_41341.1	1245	8e-25	1054 - 1113	100	60 / 60	plus
Harvest35	U35_700	868	3e-25	809 - 868	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_700 868 Hv_44K_v2
CTACTAGCAAGTCATGGCATCTTCCAGGAGTAGTCTTGCGATGTTCGCCCTGGCCATAGT
CATGGCCGTGGTGGCCGGCGTCTCGGCGCAGAACACCCCGCAGGACTTCGTCAACCTGCA
CAACCGCGCCCGCGCCGCGGACGGCGTCGGCCCGGTGACGTGGGACAACAGCGTCGCCAA
GTTCGCGCAGGACTACGCCAACAAGCGCGCCGCCGACTGCCGGCTGCAGCACTCCGGGGG
GCCGTTCGGCGAGAACATCTTCTGGGGGTCCGGGCGGTCGTGGACGGCCGCGAACGCGGT
GAAGTCGTGGGTGGACGAGAAGCGGAATTACCACCACAACACCAACACCTGCGACGCCGG
CAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCAAGTCGACCCGCATCGGCTGCGC
TCGCGTGGTCTGCGCCGGGAACCGGGGCGTCTTCATCACCTGCAACTACAACCCCCCGGG
CAACTTCAACGGCGAGCGCCCGTTCCTCACCCTTGACGCCGAAGCCAAGTAGTACGTACG
TGCGTGTGGATGTGATCATACATGCATACGTACGTGCTTATGTTTTCGTGTGTGTGTGTG
TCTTTTGAATATTTATTTACGTCTGTATACATATGTTACTTATACAGTACGTACGTAAAT
AAGCACACATTACGGCCAGCATGTATCTATGCGGCTCTGTGGAGCGTGTAATTGTAATCA
TATATACGTCCATGCAAATGTCTTTCCTTTTGTTTTCTTAAAAAAAAAAAAAAGCTAGCC
AAATAAATGACGATAACACGAAAGTACCTTCCTAGACCTACCTTTCTACACCTGAGCTTA
TATACTTCTTGTGTGAACAGTAATGAAT

Homology of Contig U35_700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11500.1	177	2e-95	protein\|SCP-like extracellular protein, expressed
Brachypodium v1_2	Bradi1g57590.1	165	2e-74
Arabidopsis v10	AT5G57625.1	207	2e-55	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein \| chr5:23337865-23338577 FORWARD LENGTH=207