barSeed - Barley Seed Development Database

Probe ABC02213

Source Contig ABC02213

barSeed

Links

Affymetrix Source Sequence (1440 bp)

>ABC02213 1440
GGTGCATACATGAGTAGTACTAATACTAATTAATAGGAGTAATTGTTTCCACGCCTTAAA
CTTTGTCTATTTTAAAAATGCACGCAAGTTTAACTGTGACAGATGGAGTAGTAGCGAGGA
CGCAAGCATATTTTGTCACTTGCCCCTGCCGCCCAAGTGGATGTACGCTTTTCAACTTCG
CCCGTCCAATGAGGTTATGTTCTAGTTCTATATTATTGCAAACTCAACTGCTCAAAGTAA
TCGACCAATGTATATCGGGAAATCGCATGGAATAATCACTCGTTGTCAGAACTCAGAAGT
ATTTATATGTACTCGAAATAAAGGAAGCCTTGCCACTTGTAACTAGCAATTCTTGATACA
TATGCATGCACTCGATTCAACCCCACGTCATCTTCTTGCTAGCTTCCTTGGAAAATAAAG
AACTATGGACTCCCTACAAAATTTTGCCACGGGCCCTTTCTATATGCTCATCCTATAAAT
ATCCATCAAGTTCAAGCACTCTTCATCGATCTGGAGCCACCTACTAGTCATGGCATCTTC
CAAGAGTAGTCTTGCAATGTTCGCACTAGCCATAGTCATGGCCGTGGTGGCCGGCGTCTC
GGCGCAGAACACCCCGCAGGACTTCGTCAACCTGCACAACCGCGCCCGTGCTGTGGACGG
CGTCGGCCCGGTGGCGTGGGACAACAACGTGGCCAGGTTCGCACAGAACTACGCGGCGGA
GCGCGCCGGCGACTGTCGGCTGCAGCACTCCGGGGGGCCGTTCGGCGAGAACATCTTCTG
GGGGTCCGGGCGGTCATGGACGGCCGCCGACGCCGTGAAGCTGTGGGTGGACGAGAAGCA
GAACTACCATCTTGACAGCAACACCTGCGACGCCGGCAAGGTGTGCGGGCACTACACGCA
GGTGGTGTGGCGCAAGTCGATCCGCATCGGCTGCGCGCGGGTGGTCTGCGCTGGGAACCG
GGGCGTCTTCATCACCTGCAACTACGATCCCCCGGGCAACTTCAACGGCGAGCGCCCGTT
CGCGTTCCTCACCCTTGACGCCGAAGCCAAGTAGTACTGTACGTGCGTGTGAACGTTGAT
CATATACATGCATACGTACGTGCGTGTGTTTATGTGTGTGCGGTTTGAATATTGATACGT
CTACAAACGTTACATACGTACGTAAATAAGCACACATTCCCGCCTTCATGTATCGATGCG
GATGTGTAGAGCGTGTAAATGTAATCCTATATATATGCGTCCATGCAAATGTCTTTCCTT
TTGTTTTCTAAAAAAAAAAAAAAAAAAAATAAATAACATAATAATATTGGGAACCCCTGG
GAAAAAATGATACTTACGAAACGATACTTACACAAAACCAAATTTGAAGTTGTGTTCAAT
GATAAGAACCTGTAATTCTCCAAATAGGTTTATGCCATGCTTTATAAATAAAACAACTTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_12581.1	1387	0.0	202 - 1387	98	1164 / 1186	CUST_41539_PI390587928	ABC02208 ABC02209 ABC02213 ABC02214
MLOC_63125.1	1282	0.0	299 - 1093	88	709 / 809	CUST_20901_PI390587928 CUST_41540_PI390587928	ABC02208 ABC02209 ABC02213 ABC02214
MLOC_63125.2	767	7e-77	263 - 578	84	278 / 330	CUST_20901_PI390587928 CUST_41540_PI390587928	ABC02208 ABC02213
AK358272	2835	7e-57	128 - 529	77	318 / 411	None	ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
AK365104	758	1e-55	270 - 543	82	227 / 278	None	ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
MLOC_52081.1	635	1e-55	307 - 580	82	227 / 278	None	ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
AK370002	730	4e-54	272 - 545	81	226 / 278	CUST_41532_PI390587928 CUST_41536_PI390587928	ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
AK354849	1844	2e-52	22 - 295	81	225 / 278	None	ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214 ABC07939 ABC07940