barSeed - Barley Seed Development Database

Probe CUST_41539_PI390587928

Source Contig U35_701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41539_PI390587928	Hv_44K_v2	TGTGTAGAGCGTGTAAATGTAATCCTATATATATGCGTCCATGCAAATGTCTTTCCTTTT	686	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	1.021	0.677	0.628	1.265	1.126
Raw	2.588	5.962	2.353	4.331	2.750	2.876

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12581.1	1387	2e-24	381 - 440	100	60 / 60	minus	ABC02208 ABC02209 ABC02213 ABC02214
JLOC1	JLOC1_8446.1	1207	8e-25	289 - 348	100	60 / 60	minus
Harvest21	ABC36656	371	3e-25	30 - 89	100	60 / 60	minus
Harvest21	ABC02213	1440	3e-25	1203 - 1262	100	60 / 60	plus	ABC02213
Harvest35	U35_701	822	3e-25	687 - 746	100	60 / 60	plus

Contig Sequence (822 bp)

>U35_701 822 Hv_44K_v2
CCACCTACTAGTCATGGCATCTTCCAAGAGTAGTCTTGCAATGTTCGCACTAGCCATAGT
CATGGCCGTGGTGGCCGGCGTCTCGGCGCAGAACACCCCGCAGGACTTCGTCAACCTGCA
CAACCGCGCCCGTGCTGTGGACGGCGTCGGCCCGGTGGCGTGGGACAACAACGTGGCCAG
GTTCGCACAGAACTACGCGGCGGAGCGCGCCGGCGACTGTCGGCTGCAGCACTCCGGGGG
GCCGTTCGGCGAGAACATCTTCTGGGGGTCCGGGCGGTCATGGACGGCCGCCGACGCCGT
GAAGCTGTGGGTGGACGAGAAGCAGAACTACCATCTTGACAGCAACACCTGCGACGCCGG
CAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCAAGTCGATCCGCATCGGCTGCGC
GCGGGTGGTCTGCGCTGGGAACCGGGGCGTCTTCATCACCTGCAACTACGATCCCCCGGG
CAACTTCAACGGCGAGCGCCCGTTCGCGTTCCTCACCCTTGACGCCGAAGCCAAGTAGTA
CTGTACGTGCGTGTGAACGTTGATCATATACATGCATACGTACGTGCGTGTGTTTATGTG
TGTGCGGTTTGAATATTGATACGTCTACAAACGTTACATACGTACGTAAATAAGCACACA
TTCCCGCCTTCATGTATCGATGCGGATGTGTAGAGCGTGTAAATGTAATCCTATATATAT
GCGTCCATGCAAATGTCTTTCCTTTTGTTTTTTAAAAAAAAAAAAAAAAAAAATAAATAA
CATAATAATATTGGGAACCCCCGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11500.1	177	2e-95	protein\|SCP-like extracellular protein, expressed
Brachypodium v1_2	Bradi1g57590.1	165	2e-70
Arabidopsis v10	AT4G33720.1	163	7e-58	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein \| chr4:16182813-16183304 FORWARD LENGTH=163