barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41536_PI390587928Hv_44K_v2GCTATGTATTCTCCTCTCCATCATGGACAGTAATAAATAATGAGCTTTTTTACTGTACTG691GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9744.4840.7200.5881.3451.198
Raw 3.16417.2032.7633.6063.2473.797



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3700027309e-22670 - 7279857 / 58plus ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
Harvest21ABC022097683e-25692 - 75110060 / 60plusABC02209
Harvest35U35_7037683e-25692 - 75110060 / 60plus
Harvest35U35_7057292e-22652 - 7099857 / 58plus



Contig Sequence (768 bp)

>U35_703 768 Hv_44K_v2
GAGCTAGCTACGGCCTACACATACGGAGGCACAAAGAAATCATTTACACACCAAACCCAG
AATGGAGACGCCCAAGCTGGCCATTTTGCTCGCCCTAGCCATGGCAGCCGCCATGGTTAA
TCTTTCCCAAGCGCAAAACTCGCCTCAGGACTACCTTTCACCCCACAACGCCGCCCGCGC
TGCCGTCGGCGTGGGCGCAGTGAGCTGGAGCACGAAGCTGCAGGCGTACGCCCAGAGCTA
CGCCAACCAGAGGATCGGCGACTGCAAGCTCCAGCACTCCGGCGGGCCCTACGGGGAGAA
CATCTTCTGGGGGTCGGCCGGCGCGGACTGGAAGGCGGCGGACGCGGTGAAGCTGTGGGT
GGACGAGAAGAAGGACTACGACTACGGGTCCAACACCTGTGCAGGGGGGAAGGTGTGCGG
GCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCTCGCGTCGTCTG
CAACAACAACGGCGGCGTCTTCATCACCTGCAACTACGAGCCCGCCGGGAATGTTGTTGG
ACAGAAACCATACTAAACTGTGATTGCTTTTCGCAGTACATATACATAGTCCAGTAGTCC
CTCGTTCCTCACGTGCATGGGATTCATGCACGCTCGTATCTATAATTAGCTAGAGGGGCT
GGGCGAGTAAATAAAAGGAATGCTGTAATAAGCTATGTATTCTCCTCTCCATCATGGACA
GTAATAAATAATGAGCTTTTTTACTGTACTGAAAAAAAAAAAAAAAAA



Homology of Contig U35_703 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g28500.11685e-75protein|SCP-like extracellular protein, expressed
Brachypodium v1_2Bradi1g57540.11726e-59
Arabidopsis v10AT4G33720.11631e-51CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163