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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_41532_PI390587928Hv_44K_v2CTATGTATTCTCCTCTCCATCATGGACTGTAATAAATAATGAGCTTTTTTACTGTACCCT652GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9744.4530.7530.5881.3451.198
Raw 2.77816.8603.6053.3262.9872.925



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3700027306e-24671 - 72910059 / 59plus ABC02208 ABC02209 ABC02210 ABC02211 ABC02212 ABC02213 ABC02214
Harvest21ABC022097686e-22693 - 7499856 / 57plusABC02209
Harvest35U35_7057293e-25653 - 71210060 / 60plus
Harvest35U35_7037686e-22693 - 7499856 / 57plus



Contig Sequence (729 bp)

>U35_705 729 Hv_44K_v2
CTAGCTACGGCCCTACACATACGCAGGCACAAAGAAATCATTTAGACACCAAACCCAGAA
TGGAGACGCCCAAGCTGGCCATTTTGCTCGCCCTAGCCATGGCAGCCGCCATGGTTAATC
TTTCCCAAGCGCAAAACTCACCTCAGGACTACCTTTCACCCCACAACGCCGCCCGCGCTG
CCGTCGGCGTGGGCGCAGTGAGCTGGAGCACGAAGCTGCAGGCGTACGCCCAGAGCTACG
CCAACCAGAGGATCGGCGACTGCAAGCTCCAGCACTCCGGCGGGCCCTACGGGGAGAACA
TCTTCTGGGGGTCGGCCGGCGCGGACTGGAAGGCGGCGGACGCGGTGAAGCTGTGGGTGG
ACGAGAAGAAGGACTACGACTACGGGTCCAACACCTGTGCAGGGGGGAAGGTGTGCGGGC
ACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCTCGCGTCGTCTGCA
ACAACAACGGCGGCGTCTTCATCACCTGCAACTACGAGCCCGCCGGGAATGTTGTTGGAC
AGAAACCATACTAAACTGTGATTGCTTTTCGCAGTACATATATTCATGCACGCTCGTATC
TATAATTAGCTAGAGGGGCTGGGCGAGTAAATAAAAGGAATGCTGTAATAAGCTATGTAT
TCTCCTCTCCATCATGGACTGTAATAAATAATGAGCTTTTTTACTGTACCCTAAAAAAAA
AAAAAAAAA



Homology of Contig U35_705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g28500.11683e-75protein|SCP-like extracellular protein, expressed
Brachypodium v1_2Bradi1g57540.11724e-59
Arabidopsis v10AT4G33720.11637e-52CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163