barSeed - Barley Seed Development Database

Probe CUST_41518_PI390587928

Source Contig U35_712

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41518_PI390587928	Hv_44K_v2	TTCGCTATAAATTGGCAGGCTTTTAATGCAAAAATGCGTTTTTTCTTTGCGGGTAGGATA	508	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.833	2.924	2.564	3.428	2.956	3.009

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75969.1	1132	3e-22	47 - 102	100	56 / 56	minus	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
JLOC1	JLOC1_50675.1	929	1e-22	853 - 908	100	56 / 56	plus
Harvest35	U35_712	584	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_712 584 Hv_44K_v2
ACAGCGCGGCCGGACGGGTACCCGGATACGGCGTGATCACCAACGTCATCAATGGCGGGA
TCGAATGCGGCAAGGGGCAGAACGACAAGGTGGCCGACCGGATCGGGTTCTACAAGCGCT
ACTGTGACATCTTCGGCATCGGCTACGGGAATAACCTCGACTGCTACAACCAATTGTCGT
TCAACATCGGGCTCGCGGTACAGTGAGATCATAAGGCTGGGTCCTCGATCCATGGATGCA
TGTGCGTGTGTGGATGTGATGATCACCCACAAATAAATAATCTTGGTAAGTATTTTATGA
CCAAATAAATGGATGTCCAGACCTTCCAGACATCTGTAATGGAGTATATAGTACATGTAT
GTCGATGCACGGACAGGAAAGGAAGTGTCGCCACCTTTTATTATAAACATATTCTCGTTT
ATGCAGAGACGACTGCAAAAATATATGTCGCCTACGCACCGTCCATACTTGCTTGATTCG
GTGGAGTGATCTTTTATACTCCAGTAATTTCGCTATAAATTGGCAGGCTTTTAATGCAAA
AATGCGTTTTTTCTTTGCGGGTAGGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None