barSeed - Barley Seed Development Database

Probe CUST_41516_PI390587928

Source Contig U35_713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41516_PI390587928	Hv_44K_v2	TTGCTTGTTTCGGTGGAGTGATCTTTTATACTCCAGTAATTTCGCTATAAATTGGCAGGC	936	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	1.899	0.677	0.612	1.265	1.126
Raw	3.568	15.550	3.415	4.605	2.971	3.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75969.1	1132	2e-24	83 - 142	100	60 / 60	minus	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
JLOC1	JLOC1_50675.1	929	8e-25	813 - 872	100	60 / 60	plus
Harvest21	ABC03578	742	1e-23	669 - 728	98	59 / 60	plus	ABC03578
Harvest21	ABC03574	636	2e-21	27 - 79	100	53 / 53	minus	ABC03574
Harvest35	U35_713	1017	3e-25	937 - 996	100	60 / 60	plus
Harvest35	U35_712	584	1e-23	469 - 528	98	59 / 60	plus

Contig Sequence (1017 bp)

>U35_713 1017 Hv_44K_v2
CACGCGTCCGCCCGGAAGCGGGAGGTGGCCGCCTTCTTCGGCCAGACTTCCCACGAGACC
ACCGGCGGCTGGCCTACCGCGCCCGACGGCCCCTTTTCGTGGGGCTACTGCTTCAAGCAG
GAGCGGGGCTCGCCGCCGAGCTACTGCGACCAGAGCGCCGACTGGCCGTGCGCGCCCGGC
AAGCAGTACTATGGCCGCGGCCCCATCCAGCTCACCCATCTTTGTTGGCCTGGATTTTGA
GTTTTGCTTGTTTCATCCAGCTCACCCACAACTACAACTACGGACCGGCGGGGCGGGCGA
TCGGGGTGGACCTGCTGAACAACCCGGACCTGGTGGCGTCGGACCCGACGGTGGCGTTCA
AGACGGCGATTTGGTTCTGGATGACGACGCAGTCCAACAAGCCGTCGTGCCACGACGTGA
TCACGGGGTTGTGGAGGCCGACGGCCAGGGACAGCGCGGCCGGACGGGTACCCGGATACG
GCGTGATCACCAACGTCATCAATGGCGGGATCGAATGCGGCAAGGGGCAGAACGACAAGG
TGGCCGACCGGATCGGGTTCTACAAGCGCTACTGTGACATCTTCGGCATCGGCTACGGGA
ATAACCTCGACTGCTACAACCAATTGTCGTTCAACATCGGGCTCGCGGTGCAGTGAGATC
ATAAGATTGGGTCCTCGGTTTATGCATGTGCGTGTGTGGATGTGATGATCACCCACAAAT
AAATAATCTTGGTAAGTATTTTATGACCAAATAAATGGATGTCCAGACCTTCCAGACATC
TGTAATGGAGTATATAGTACATGTATGTCGATGCACGGACAGGAAAGGAAGTGTCGCCAC
CTTTTATTATAAACATATTCTCGTTTATGCAGAGACGACTGCAAAAATAAAAAAAAAAAA
AAAAACGTCCAAAAAAAAAAAAAAAAACGTCCATACTTGCTTGTTTCGGTGGAGTGATCT
TTTATACTCCAGTAATTTCGCTATAAATTGGCAGGCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33140.1	335	5e-90	protein\|CHIT5 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi2g47210.1	323	4e-90
Arabidopsis v10	AT3G12500.1	335	8e-85	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335