barSeed - Barley Seed Development Database

Probe CUST_41504_PI390587928

Source Contig U35_719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41504_PI390587928	Hv_44K_v2	GGGGGTAATTAATCAGGTTGCCTCCACAGAATAAATAAAACTGTAGATGTGTTGTTTGAG	1361	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57544.1	1481	7e-23	1425 - 1481	100	57 / 57	plus	ABC03026 ABC40375
JLOC1	JLOC1_37314.1	1822	8e-25	1437 - 1496	100	60 / 60	plus
Harvest21	ABC40375	507	3e-25	26 - 85	100	60 / 60	minus	ABC40375
Harvest21	ABC50456	606	8e-21	1 - 55	98	55 / 56	minus
Harvest35	U35_719	1501	3e-25	1362 - 1421	100	60 / 60	plus

Contig Sequence (1501 bp)

>U35_719 1501 Hv_44K_v2
AAATAACAATACCGGGCGCATTAGTGTCTGGTAATTGGAACACACACACACGCCGTCTTC
GTCGTCGTCTCGTCCGACCGCGACACGTAGTCACGTCGTACGCTGTTGAAACTTGATAGG
ATAGCTAGTGAGCCATGGCGACGATGAGAGCCGCGCTGCTTGGCACCGTGGTGCTGCTGT
GCGCGCTCCGTCACGGCGGAGCGCAGCGGTACGAGGCCATCTACAGCTTCGGCGACTCCA
TCTCCGACACCGGCAACCTCTGCGTCGGCGGCTGCCCGTCGTGGCTCACCACGGGGCAGT
CGCCCTATGGCGAGACCTTCTTCAAACGCCCCACCGGCCGCTGTTCCGACGGCCGCGTCA
TCGTCGACTTCCTCGCTGAGCACTTTGGGCTGCCGCTGCTGCCGGCGTCCAAGGCCGGCG
GCGACTTCAAGAAGGGCGCCAACATGGCGATCATCGGCGCCACCACCATGGACTTCAGCT
TCTTCCAGTCCATCGGCCTCAGCGACAAGATCTGGAACAACGGCCCCCTGGACACCCAGA
TCCAGTGGTTCCGGAAGCTCCTCCCGTCCGCCTGCGGCAAGGATTGCAAGCGGCATCTTT
CCAAGTCCCTCTTCGTGGTGGGCGAGTTCGGCGGCAACGACTACAACGCCGCGCTCTTCT
CCGGCCGGACCATGGCCGACGTCAGGGGCTACGTGCCGCGGGTCGTCAGCCATATCATCC
GTGGCCTCGAGACGATGATCAGAGTGGGCGCGATGGACATCGTGGTGCCGGGGGTGCTCC
CCATCGGGTGCTTCCCCATCTACCTCACCCTCTACGGGACCTCCAACGCCGGCGACTACG
ACGGCGACGGCTGCCTCAAGAGCTACAACGAGCTCTCCGCCCACCACAACTCGCTGCTCC
GGCGGAGCCTCGCCAACCTCCAGAGGACATACCCCCACACCAGGATCATGTACGCCGACT
TCTACGCGCAGGTCATCCAGATGATCCGGGCCCCTCAGAATTTCGGCCTCAAGTATGGGC
TGAAGGTGTGCTGCGGAGCCGGCGGGCAGGGCAAGTACAACTACAACAACAAGGCAAGGT
GCGGCATGGCCGGGGCGAGCGCCTGCTCTGACCCGCACAACTACCTCATCTGGGACGGCA
TCCATCTCACCGAGGCGGCGTACCGCTCCATCGCCAATGGCTGGCTCAAGGGCCCTTACT
GCAGCCCCCGCATCTTGCACTGATCATCCGTAGGCTCTAATGTTGATTTACGTATTATTG
TTTTATTTATTGACTTGATGCGTTTTGTGAGTGTGCGTGGTGGGATCGATCGATGCGTCA
TGTCTATGTGTGGATGTAACAACTAATATGATGAATTTTATGGGGGTAATTAATCAGGTT
GCCTCCACAGAATAAATAAAACTGTAGATGTGTTGTTTGAGATTTTAAAAAAAAAAAAAA
AAGACTTGTCTCATTCATTAATTAAGGGGGAAATGAGTAGAAAGTTTTGTAAAAAAAAAA
A

Homology of Contig U35_719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11910.1	362	0.0	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g32540.1	368	0.0
Arabidopsis v10	AT5G45910.1	372	6e-99	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372