barSeed - Barley Seed Development Database

Probe CUST_41502_PI390587928

Source Contig U35_1898

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41502_PI390587928	Hv_44K_v2	CTGGTTTGTGATTGCTTACCACAATGATTGTGGTATATGTGTACATGTATTTGTATCTTG	1726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363875	1796	2e-24	1706 - 1765	100	60 / 60	plus	ABC12286
MLOC	MLOC_67318.1	1837	2e-24	43 - 102	100	60 / 60	minus	ABC12286
JLOC1	JLOC1_44438.1	1839	8e-25	45 - 104	100	60 / 60	minus
Harvest21	ABC39900	501	3e-25	60 - 119	100	60 / 60	minus
Harvest21	ABC12286	1793	3e-25	1697 - 1756	100	60 / 60	plus	ABC12286
Harvest35	U35_1898	1846	3e-25	1727 - 1786	100	60 / 60	plus
Harvest35	U35_1897	1308	3e-25	1073 - 1132	100	60 / 60	minus

Contig Sequence (1846 bp)

>U35_1898 1846 Hv_44K_v2
TCGAGCACTGTTGGCCCACTGGATGCAACACTGCAGCGTACAACAAGCTAGCTAGCAAAG
ATGGCCATGGCTAGGAGCTCCAGCCTAGTGCTCGTCGCCTTCGCCCTGCTCTGCTGCTAC
GCCTCCTCCGTCGCCTCCCAGGGTAACTCGTCCGATGCATTCCTCTCGTGCCTGTCGGCG
AGCATCCCCCGCCAGCTCGTGTTCACGCCGAGCTCGCCGTCGTTCACGCCGCTGCTCAAG
TCCTCCATCCGGAACCCCAAGTTCTTCACCCCGAGCACCGTGAGGCCGCTCTACATCGTC
ACGCCCACGAACGCGTCGCACGTGCAGGCCGCCGTGCTCTGCGGACGCCGGAGCGGGCTG
CGCATCCGCGTGCGCAGCGGCGGGCACGACTACGAGGGCCTGTCGTACCGGTCCGTGCGG
GCCGAGGCGTTCGCGGTGCTCGACCTGTCGAGCCTCCGCTCCGTGCGGGTCGACGCGCAG
GCGGCGACCGCGTGGGTGGACTCCGGCGCCCAGCTCGGCGAGCTCTATTATGCGATCGGG
AAGGCCAGCAGCGTGCTCGGGTTCCCCGGCGGCCTGTGCCCGACCGTCGGCGTCGGAGGC
CATTTCAGCGGCGGCGGCTTCGGCATGCTGCTGCGAAAGTACGGCATGGCCATCGACCAC
GTCATCGACGCCGTGCTGGTGGACGCCAAGGGGAGGCTCCTGAACAAGAACACCATGGGG
AGCGACGTCTTCTGGGCCCTCCGAGGCGGCGGCGGCGAGAGCTTCGGGGTCGTGCTGTCG
TGGCAGGTGAAGCTCCTGCCCGTCCCGCCCAAGGTCACGGTGTTCAACGTCCCGGTGACC
GCAAGCCAGGGCGCCGCGGACGTGGTCACGAGGTGGCAGCAGATCGCGCCGGCCCTGCCG
GAGGACCTGATCATCAGGGTGGTCGTCCAGCAGAAGACGGCCAACTTCCAGTCCCTGTTC
CTCGGCACCTGCGACGCGCTGCTGCCGGTGATGAGCAGCCGCTTCCCGGAGCTGAGGTTC
AACCGGTCCGACTGCAGGGAGATGACCTGGATCCAGTCCGTGCCCTACATCTACCTCGGC
AGCGCCTCGACCGTGGAGGACCTCCTGAACCGGACCACCGCCGAGTCCGTCTTCAGCAGC
GGCTACAAGGCGACGTCCGACTACGTCCGGCGGGCCATCCCGCGGGACGCGTGGGCCAGC
ATCTTCACCAAGCTGGCGCAGCCCAACGCGGGGCTCATGATCCTGGACCCCTACGGCGGG
CAGATCGCGGCCGTGCCGGAGTCGGCGACGCCGTACCCGCACCGCGCCGGCGTGCTGTAC
AACATCCAGTACATGAACTTCTGGTCGATGGCGTCGGGGGACGGGGCCGTGCAGACCAGG
TGGATCAGGGAGTTCTACGCGTTCATGGCGCCGTTCGTGAGCTCCAGCCCGAGGGAAGCC
TACTTCAACTACAGGGACCTGGACCTCGGCGAGAACGTCGTCGTCGGCAACGTCAGCAGC
TTCCAGGCCGGGATGGTCTGGGGCCAGAAGTACTTCAAGGGTAACTACCAGAGGCTGGCG
ATGGCCAAGGCCCAGATCGACCCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCA
TTTGCCAATAGCAGGTGATCGAACAGCAAAATGGGCCGCTAGCTCTTTTGTGTACATGGT
AGCTAAGTTACATATTTAACTTTATTTGTACATGTATTTGTTGATGCTGGTTTGTGATTG
CTTACCACAATGATTGTGGTATATGTGTACATGTATTTGTATCTTGAACAAATCTATAAT
TAAATTACACGACGTGTGAATCTTTAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_1898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35700.1	529	0.0	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g38250.1	522	0.0
Arabidopsis v10	AT4G20820.1	532	5e-139	FAD-binding Berberine family protein \| chr4:11150160-11151758 FORWARD LENGTH=532