barSeed - Barley Seed Development Database

Probe CUST_41481_PI390587928

Source Contig U35_739

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41481_PI390587928	Hv_44K_v2	GTACTTAAATGAGCATTCCCGTGCTCTGGTTTGATAATAAATTGTGCCCAGATATTGTCT	924	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252867.1	2197	2e-24	2131 - 2190	100	60 / 60	plus	ABC01389 ABC01390 ABC01391 ABC02425 ABC43459
JLOC1	JLOC1_28969.1	1306	8e-25	1089 - 1148	100	60 / 60	plus
Harvest21	ABC42318	423	1e-23	1 - 57	100	57 / 57	minus
Harvest21	ABC02426	980	5e-23	49 - 104	100	56 / 56	minus
Harvest35	U35_739	1068	3e-25	925 - 984	100	60 / 60	plus

Contig Sequence (1068 bp)

>U35_739 1068 Hv_44K_v2
GGGGAGCAGCAGTGAGGCTCCATTGCCTATTTAGCCGAGACCCCGAGCGCGGTCATTTCC
CCATCCCGTCCCGTCCCATCCCATCCCATCCGAGAAGAAGAGATAGAAAAAAAAAGGTTC
GAGGGCGTTGCGGAGTGAGAAGAGACGAGATGGCTCCGGTGAAGCTGTACGGCGCGACCC
TGTCGTGGAACGTCACCAGGTGCGTGGCGGCGCTGGAGGAGGCCGGCGTCGAGTACGAGC
TCGTCCCCATCAACTTCAGCACCGGCGAGCACAAGAGCCCCGACCACCTCGCCAGGAACC
CCTTTGGGCAGGTGCCAGCTTTGCAGGATGGTGACTTGTATGTCTTCGAATCACGTGCTA
TTTGCAAGTATGCGTGCCGCAAGAACAAGCCAGAGCTGTTGAAGGAGGGCGACATCAAGG
AGTCAGCAATGGTGGATGTGTGGCTCGAGGTGGAGGCCCATCAGTACACCGCCGCTCTGA
GCCCCATTCTCTTCGAGTGCCTTATCCATCCTATGCTTGGGGGAGCCACTGACCAGAAGG
TCATCGACGACAACCTTGTTAAGATCAAGAACGTGCTGGCGGTGTACGAGGCGCGGCTCA
CCAAGTCCAAGTACCTGGCTGGAGACTTCCTCAGCCTTGCGGACCTTAACCATGCGTCTG
TCACCCTGTGCTTGGCGGCCACACCCTATGCATCTCTGTTTGACGCTTACCCGCATGTGA
AGGCCTGGTGGACTGACCTGCTGACGAGGCCGTCCGTCCAGAAGGTCGCTGCGCTGATGA
AGCCATGATCTTAGTTTCTGGGGCTTGTTCGTCGAAATAAGCCGAGGTGTGTCACCCCCG
ATGTGTGCCTTTCCTAGTGTGTGTTCTTGTGATGTGTCCTGGTGTTGAATGTTCAGGCTT
GTGCTTGCGATCCTGTCGAATCTTGTACTTAAATGAGCATTCCCGTGCTCTGGTTTGATA
ATAAATTGTGCCCAGATATTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAATTTCTCATC
TGTTGCTTTGATGATAAACTACANAGTCTCAAGACGTACAAAGCTTGT

Homology of Contig U35_739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55830.1	216	6e-120	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g50760.3	215	2e-140
Arabidopsis v10	AT3G62760.1	219	5e-54	\| Symbols: ATGSTF13 \| Glutathione S-transferase family protein \| chr3:23217425-23218246 REVERSE LENGTH=219