barSeed - Barley Seed Development Database

Probe CUST_41441_PI390587928

Source Contig U35_17107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41441_PI390587928	Hv_44K_v2	GGAAAGGTCGGTTTTAGAAAAAGAGGTCCAGGGTACTTTTCTTTAATATTGCAAAAAGAA	711	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13315.1	696	2e-24	97 - 156	100	60 / 60	minus	ABC16347
JLOC1	JLOC1_9001.1	673	8e-25	104 - 163	100	60 / 60	minus
Harvest35	U35_17107	894	3e-25	712 - 771	100	60 / 60	plus

Contig Sequence (894 bp)

>U35_17107 894 Hv_44K_v2
TAAATTTACAGGTTCCAGCAAAACCAAACTATAACTTGGTTATGTACTACGCGGCAGAGA
AGCCAGTGAACAAAGGATCTCTCTTGGGTAGATTCATTGATGGAACTGATGCATTCCGAG
ATGCCAGATTTAAGCTTATACCAAGTATTGTTGAGGGTTATTGGATGGTAAAGCGTGCAG
TTGGGACGAGAGCTTGCCTTCTGGGGAAAGCAGTAACATGCAATTATCTTCGGCAGGATA
ACTTTCTCGAGATAGATGTTGACATTGGTTCCTCTTCTGTTGCACGGAGCATTATTGGCC
TAGTCCTGGGATATGTGACAAGCATCGTTGTTGATCTTGCTATTCTAGTTGAGGCAAAGG
AAGAGAAAGAGCTGCCTGAGTACATTCTTGGCACTGTTCGTCTTAACCGTGTAAATCCTG
AGGCTGCTGTACCAATCTGAGTTAATTCCATTTCCCCACCCCTTCTCCTACACAAGAGAT
GGTGGTTGGATCTGCACAATTTTTTACCATCATCTTCAGTTTTCGGAGGTGCACATTTAA
AAGAAGGAAACCATGGTCACTATGTAATAATCCCAGGTCAAGATCTGTGTCACACCACAT
GTATAGAGTACAGAAGTGGTGCCTATCGTAAATGGAAGAACACTAGAAATACTATATTGT
CATGGAAGAACTGTATTGCCTAATGACACATATGACCGAGCAAATAAACATGGAAAGGTC
GGTTTTAGAAAAAGAGGTCCAGGGTACTTTTCTTTAATATTGCAAAAAGAAAATATCCAT
GGTATTTGGAATACAAAGGTTTGTAAAACTGTGATATTTACCGGATTCAAACATCTTGGA
AGCATTTACAAAAAAAAAAAAAAAAACTACAGCTTTTCAACAATTTAAGAAAAA

Homology of Contig U35_17107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34060.4	653	4e-86	protein\|DUF1336 domain containing protein, expressed
Brachypodium v1_2	Bradi3g37010.1	769	8e-86
Arabidopsis v10	AT5G35180.4	811	2e-73	Protein of unknown function (DUF1336) \| chr5:13424538-13432787 FORWARD LENGTH=811