barSeed - Barley Seed Development Database

Probe CUST_41440_PI390587928

Source Contig U35_17108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41440_PI390587928	Hv_44K_v2	AAGGTTAATGAGCGCTTTGACTCAGTTGCCTTGCACCCAAAAAGCCTTGTTCAGTCTGAA	751	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248279.1	2729	2e-24	1938 - 1997	100	60 / 60	plus	ABC16347
MLOC	MLOC_35775.2	417	2e-24	233 - 292	100	60 / 60	plus	None
MLOC	MLOC_35775.1	338	2e-24	234 - 293	100	60 / 60	plus	None
MLOC	MLOC_35775.3	364	2e-24	232 - 291	100	60 / 60	plus	None
JLOC1	JLOC1_23047.1	402	8e-25	270 - 329	100	60 / 60	plus
Harvest21	ABC13167	847	3e-25	717 - 776	100	60 / 60	plus
Harvest35	U35_17108	882	3e-25	752 - 811	100	60 / 60	plus

Contig Sequence (882 bp)

>U35_17108 882 Hv_44K_v2
GGCATATAACATTTTGCAGAGTCCTGCTAGTCACAAGAAAAAACCTCCAAGACATGGATA
TGAGCGTACACATATCAACCCCACAACATGGGAAATAAAGAGGTTAAACACATCAGAATC
TACTCCGAAGTGCATTGTTACTCGCATGGTGGAGATCTCTCCAGGTTTCTGGGACAGATG
GAGGAGAAGGACCTCCTCAAATTTTGAGAGAAGTATCCCTTATGCTCTGCTCAGCCAAGT
AGCAGGTCTAAGAGAGTACTTTGCAGCAAATCCAGCCATCACATCTGATTTGCCTTCAAC
AGTAGTGAAGTCAAAAGCATCTGAATCTTTGATCATCCAGAGTGAACTTGAATATTCGGA
ACCTAATGATGAGTTCTATGATGCACTTGTTAGAGGAGAATCCTTTGAAGATGATAGTGA
TGATGATGATGATGATGATGATGATGTTACAACCCCGAAGGCTGGAAAGGTGAAGTTGAA
GAACGTATCATGGGCCATTGCAGGTTTAGCTTTGAAGCGAACTAAAGCTTCGCTTGAGAG
GAGTGAATTGGTTACAAATTCTATTCCCATAGCTATTGAGTCGAGCCATTTCCATGGCAC
CGTTCGACAAGCGAAAAGTGAAGATGACCCAAATTCTTGGAGTTCACCTGGTGGAGAGAA
GTTTATGATAAGAGGGAAGACTTACTTGACAGATTACGCCAAGATTGCTGGAGGTGATCC
TCTTCTAAAGCTTATTGCAGTTGATTGGTTCAAGGTTAATGAGCGCTTTGACTCAGTTGC
CTTGCACCCAAAAAGCCTTGTTCAGTCTGAAGCTGCAAAGAAGATTCCCTTCATACTGGT
TGTAAATTTACAGGTTCCAGCAAAACCAAACTATAACTTGGT

Homology of Contig U35_17108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34060.1	764	2e-155	protein\|DUF1336 domain containing protein, expressed
Brachypodium v1_2	Bradi3g37010.1	769	5e-173
Arabidopsis v10	AT5G35180.4	811	2e-83	Protein of unknown function (DUF1336) \| chr5:13424538-13432787 FORWARD LENGTH=811