barSeed - Barley Seed Development Database

Probe CUST_41430_PI390587928

Source Contig U35_17112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41430_PI390587928	Hv_44K_v2	CCACTAGTGGCTATTTGGGGGCTGACTATCAACAATCAATGGGTAGGAGTCTTAATCAGT	135	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364046	1907	2e-24	1179 - 1238	100	60 / 60	plus	ABC03529 ABC06240 ABC06241
MLOC	MLOC_71769.2	693	2e-24	48 - 107	100	60 / 60	plus	ABC06240 ABC06241
MLOC	MLOC_71769.1	1316	2e-24	628 - 687	100	60 / 60	plus	ABC06240 ABC06241
JLOC1	JLOC1_47719.1	1317	8e-25	404 - 463	100	60 / 60	plus
Harvest21	ABC06241	881	3e-25	136 - 195	100	60 / 60	plus	ABC06241
Harvest35	U35_17112	881	3e-25	136 - 195	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_17112 881 Hv_44K_v2
TGATTGATGAAGATACACTTAAAGACATTGTCAACCTGGGATATGATAAAGACCATGTGT
GTGAATCACTGTGCAATAGGCTGCAAAATGAGGCAACTGTTGCATATTACTTACTCTTGG
ACAATCGGTTCCGGGCCACTAGTGGCTATTTGGGGGCTGACTATCAACAATCAATGGGTA
GGAGTCTTAATCAGTTTACTTCATCGGAATCAGCAAGCCCAAGTACCAGGCAGTATCTTC
CAGGAACCAATGATTCTCAAGGCAGTGGCTTGCGGCCATATTACCCCGTTGAAAGAAAAT
GGGCTCTTGGGCTCCAGTCTCGAGCTCACCCTCGTGAGATAATGATTGAGGTTCTAAAGG
CACTTCAAGAATTAAATGTCTCCTGGAAGAAGAATGGACACTACAACATGAAATGCAGAT
GGTGCCCTGGGTTTCCTCAGGTCAGTGATATGTTAGATGCCAACCACAGCTTTGTTGATG
ACTCTACCATCATGGATAACGGCGATGCCAATGGGAGGCTACCTGCCGTGATCAAGTTTG
AAATTCAGCTTTACAAGACCAAGGATGACAAGTACCTGCTGGATATGCAGAGACTTACTG
GACCTCAGCTCCTCTTCCTGGATTTTTGTGCGGCCTTCCTTACCAACCTTAGGGTTCTGT
AGTATGGTGCCTGTTCTGGTTGAGTGGTGAATGGTTAGACATATGACTGTCAGCGATGAA
TAAGTGATGGTGTGTAAATAGGTGGTGTGTTTCGTCTTCGTTTTACCCAGTCCCTGACAG
CGAACCGTGTTGTTTTGAGTGACTAGTCCTGTGTGAAGAACCAAAAGGTTAAGTGGTTGT
TATAAATAAGACTTGCTATATGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37800.1	510	3e-129	protein\|CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g65630.1	510	4e-144
Arabidopsis v10	AT3G01090.2	535	1e-85	\| Symbols: AKIN10, KIN10 \| SNF1 kinase homolog 10 \| chr3:31437-34143 REVERSE LENGTH=535