barSeed - Barley Seed Development Database

Probe CUST_41421_PI390587928

Source Contig U35_17117

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41421_PI390587928	Hv_44K_v2	AACTCTTGTTGCTATTGGTACCCATGATTTGGACACTCTGCAAGGACCCTTCTCATACGA	733	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374119	2358	7e-23	712 - 771	98	59 / 60	plus	ABC06757 ABC06758
MLOC	AK365098	4153	7e-23	569 - 628	98	59 / 60	plus	ABC06757 ABC06758 ABC07030
MLOC	AK373215	3883	7e-23	584 - 643	98	59 / 60	plus	ABC06757 ABC06758
MLOC	AK364607	2456	7e-23	959 - 1018	98	59 / 60	plus	ABC06757 ABC06758 ABC13096
MLOC	MLOC_75022.2	1523	7e-23	202 - 261	98	59 / 60	plus	ABC06757 ABC06758
MLOC	MLOC_75022.1	1974	7e-23	448 - 507	98	59 / 60	plus	ABC06757 ABC06758
MLOC	MLOC_65247.2	2251	7e-23	1588 - 1647	98	59 / 60	minus	ABC06757 ABC06758
MLOC	MLOC_65247.1	2412	7e-23	1595 - 1654	98	59 / 60	minus	ABC06757 ABC06758
JLOC1	JLOC1_50023.1	2045	4e-23	394 - 453	98	59 / 60	plus
JLOC1	JLOC1_42923.1	2351	4e-23	683 - 742	98	59 / 60	plus
Harvest21	ABC27161	735	1e-23	100 - 159	98	59 / 60	plus
Harvest21	ABC06757	2375	1e-23	734 - 793	98	59 / 60	plus	ABC06757
Harvest35	U35_17117	1369	3e-25	734 - 793	100	60 / 60	plus

Contig Sequence (1369 bp)

>U35_17117 1369 Hv_44K_v2
GAGAAAACAGCCGTCCCGTGGCCGTCGAACCCTATCAATCCCGCCGCCCGCCGCCCGCCG
CCCGGGCGCCGTGCCCAGCGTCCGGTGTGTCGTTCGACCTGCGCCCCTGCCCATCCGCTG
ACCGGCGAGGCGGCGCGCCGGTGACCGCGTTTGTCCAGACAGATCTCGACCCCGACACTG
GCGTCCTTCGGCGTCCCGCCTCAGCTAAAGGTTACCAGGCTCGCGTGTCCCGCCGCCATC
AAGCGCCACAGCCACCACTCGTGATGCCGACAGTCAGCGTTGGCCGCGACCGCCTCTTCG
CTGCACTCGGCAGGGTCTACACGCAAGACGAATTCGAGGCACTCTGCTTCGATTTCGGCA
TCGAACTTGACGATGTGACCACAGAGAAGGCCATCATCCGGAAGGAGAAGCACCTGGAGG
AGGATGTCGAAGCGGACGGTGATGATGAGGTCATCTACAAGATTGAGGTTGCCGCCAATA
GATATGATTTGTTATGTCTTGAAGGATTAGCAAGATCTCTTCGCATTTTCACTGGGAGTG
AAGCAACCCCTATATTTAAAATTGCTTCAATCTCCCGTGGTTCAATGCTTCAGATGCATG
TTAGACCACAGACCTCACAAATTAGACCATATGTAGTTTGTGCTGTCCTAAGAGGAGTAA
CTTTTGATGAAGTCAGATACAACAGCTTCATTGATCTTCAAGACAAACTCCATCAAAATA
TTTGCCGGAAGAGAACTCTTGTTGCTATTGGTACCCATGATTTGGACACTCTGCAAGGAC
CCTTCTCATACGAGGCTCTACCACCACATGAAATCAAATTTATCCCATTAAAGCAGGAGC
AAAAGTTCAGAGCGGATGCATTGATGGATTTCTACAGATCGGACATGAAATTGAAGAAGT
TTTTGCATATAATCGAGAACTCTCCAGTTTACCCAGTTATATATGATAACAACAGAACTG
TATTATCGTTACCTCCTATCATCAATGGTGCACATTCTGCTATCACCCTGAAGACAAGGA
ATGTGTTTATCGAATGCACTGCTACAGACCTTACAAAAGCAAATATTGTTCTGAATACGA
TGGTTGCAATGTTTTCGGAGTACTGTGAAAATAAGTTTGAAGTGGAACCAGTTGAAGTGG
TATCTTATGATGGAAGCACAGCCATTTACCCTGATCTTTCATGTTATAAAATGGAAGTTC
CGCTCTCTGATATTGTTGGACCCATTGGAATCTCCCTAGATGAGTCGCAGGTTATCTCCC
TTTTGAACAAAATGCAATTGCAAGCAGAACTGTGTTCATCAAATGAGAAGCCTTGTATTT
TCGTGTCTGTCCCTCCTACAAGAAGTGATGTTCTGCACGCTCGTGATCT

Homology of Contig U35_17117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48510.1	597	0.0	protein\|phenylalanyl-tRNA synthetase beta chain, putative, expressed
Brachypodium v1_2	Bradi4g06310.1	595	0.0
Arabidopsis v10	AT1G72550.1	598	1e-180	tRNA synthetase beta subunit family protein \| chr1:27319947-27323908 REVERSE LENGTH=598