barSeed - Barley Seed Development Database

Probe CUST_413_PI415269222

Source Contig TA46960_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_413_PI415269222	Hv_44K_v2	TTGCTTGATAACCTGCTCCTCGGCTGTTATAATGGCCTGTGAAATGTAATACCTTGCCTG	1172	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.222	1.770	1.087	0.791	0.365	0.395
Raw	790.284	1729.093	958.008	1082.653	176.986	206.074

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24657.4	1940	3e-24	1817 - 1875	100	59 / 59	plus
JLOC1	JLOC1_24657.3	1621	3e-24	1498 - 1556	100	59 / 59	plus
JLOC1	JLOC1_24657.2	1638	3e-24	1515 - 1573	100	59 / 59	plus
JLOC1	JLOC1_24657.1	1696	3e-24	1573 - 1631	100	59 / 59	plus
Harvest21	ABC16112	1239	3e-25	1162 - 1221	100	60 / 60	plus	ABC16112
Harvest35	U35_22027	1239	3e-25	1162 - 1221	100	60 / 60	plus

Contig Sequence (1233 bp)

>TA46960_4513 1233 Hv_44K_v2
TTCGGCACGAGGGCGTGACTTGATGGACATGAAAATTTTCGTTGACACAGATGCTGATAT
TAGGCTTGCCCGAAGAATAAGGCGTGATACAGTTGAAAGAGGTAGAGATGTTCTCTCAGT
GCTTGAGCAGTACGGGATGTTTGTGAAGCCTGCCTTTGATGATTTTATCCTGCCTTCCAA
GAAGTATGCTGATGTGATCATACCGCGAGGAGGAGATAACCATGTTGCCATTGATTTAAT
TGCGCAACATATTCGTACAAAACTTGGACAGCATGACTTGTGCAAATTTTATCGAAATGT
TCACGTAGTTAACACAACTTTCCAGATACGGGGAATGCATACCCTCATTCGTGACCGGGA
AATTACGACTCCTGATTTTGTCTTCTATTCAGATCGGCTGATTCGTCTGGTAGTTGAACA
TGGTCTGGGGAATTTGCCATTTACAGAGAAGCAGGTCGTTACACCTACAGGATCTATTTA
TTCAGGAGTTGATTTCTGCAAGAAGCTCTGTGGAGTGTCGATTGTTCGAAGTGGTGAAAG
CATGGAGAATGCTTTGCGTGCTTGTTGTAAGGGGATAAAAATAGGTAAAATCCTAATACA
TCGTGTTGGAGACAATGGACAACAACTCATATACCACAAGCTGCCCAATGATATTGAGCA
TCGTCACGTTCTACTTATGGATCCTGTGCTCGGTACAGGTAACTCAGCAAGTCAAGCTAT
ACAGCTTCTTAAAAGTACAGGAGTTCCAGAGGACCACATCATGTTTCTTAACCTTATCTC
GGCTCCTGAAGGAATCCATTGTGTCTGCAAGCAATTCCCTGGTCTGAAGATCATAACATC
GGAAATCGACGCCGGGTTGAACGAGGACTTCCGTGTCGTGCCAGGGTTGGGTGAATACGG
CGATCGCTACTTCGGCACTGACTAATCGGCTAAGATGCCGCTTTCATTGGCGGCGAAGCG
ATAGACGGGGTAGAACTAACAGGAGATATACTGGTGTTTGGTTGTTTGTTGTATACCAGC
AGAGTGGAGCGGAGGCATCACTCTGGCAACCATTGGAGGTACCAATGTCACATGATGACA
TGCATTATTATCATAATTCATATGGCTAAGCTAGACACTTAGCTCTTTATGTTCATGTGA
CGAGCTTTGACTTTTTGCGAGTTTTGAGGCCCTTGCTTGATAACCTGCTCCTCGGCTGTT
ATAATGGCCTGTGAAATGTAATACCTTGCCTGG

Homology of Contig TA46960_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41790.1	492	2e-172	protein\|phosphoribulokinase/Uridine kinase family protein, expressed
Brachypodium v1_2	Bradi3g41130.1	491	5e-169
Arabidopsis v10	AT3G27190.1	483	3e-163	\| Symbols: UKL2 \| uridine kinase-like 2 \| chr3:10039504-10042917 REVERSE LENGTH=483