- Probe CUST_41360_PI390587928
- Source Contig U35_7060
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_41360_PI390587928 | Hv_44K_v2 | AGGCTTCTTCACAAGATTGTAGAAGGGCCTGAATTTATTAATGATAGAAATGAAATGCTC | 840 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.583 | 1.084 | 1.736 | 2.094 | 0.685 | 0.722 |
| Raw | 9.137 | 27.333 | 37.633 | 68.684 | 8.019 | 9.188 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75747.1 | 2150 | 7e-23 | 1987 - 2046 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.15 | 3604 | 7e-23 | 3376 - 3435 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.6 | 3422 | 7e-23 | 3194 - 3253 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.5 | 3001 | 7e-23 | 2773 - 2832 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.7 | 3494 | 7e-23 | 3266 - 3325 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.8 | 3140 | 7e-23 | 2912 - 2971 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.17 | 2803 | 7e-23 | 2609 - 2668 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75747.3 | 1229 | 7e-23 | 1066 - 1125 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.11 | 2649 | 7e-23 | 2486 - 2545 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.12 | 3110 | 7e-23 | 2905 - 2964 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.13 | 1518 | 7e-23 | 1313 - 1372 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.16 | 3575 | 7e-23 | 3347 - 3406 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.14 | 3427 | 7e-23 | 3222 - 3281 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.9 | 2461 | 7e-23 | 2337 - 2396 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_75748.10 | 2644 | 7e-23 | 2520 - 2579 | 98 | 59 / 60 | plus | ABC14726 ABC47837 |
| MLOC | MLOC_16192.1 | 866 | 3e-21 | 315 - 374 | 97 | 58 / 60 | minus | ABC14726 |
| JLOC1 | JLOC1_50526.16 | 2591 | 4e-23 | 2359 - 2418 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.15 | 1636 | 4e-23 | 1404 - 1463 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.14 | 2399 | 4e-23 | 2167 - 2226 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.13 | 3125 | 4e-23 | 2893 - 2952 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.12 | 2097 | 4e-23 | 1865 - 1924 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.11 | 3423 | 4e-23 | 3191 - 3250 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.10 | 3066 | 4e-23 | 2834 - 2893 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.9 | 2590 | 4e-23 | 2358 - 2417 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.8 | 3110 | 4e-23 | 2878 - 2937 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.7 | 3075 | 4e-23 | 2843 - 2902 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.6 | 3414 | 4e-23 | 3182 - 3241 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.5 | 2808 | 4e-23 | 2576 - 2635 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.4 | 2817 | 4e-23 | 2585 - 2644 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.3 | 3400 | 4e-23 | 3168 - 3227 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.2 | 1627 | 4e-23 | 1395 - 1454 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50526.1 | 2460 | 4e-23 | 2228 - 2287 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_50527.1 | 3700 | 4e-23 | 170 - 229 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC14726 | 1066 | 3e-25 | 841 - 900 | 100 | 60 / 60 | plus | ABC14726 |
| Harvest35 | U35_7060 | 1066 | 3e-25 | 841 - 900 | 100 | 60 / 60 | plus |
Contig Sequence (1066 bp)
>U35_7060 1066 Hv_44K_v2 TTTTATGGTATGCTTTTGGATCTTGCCCGTCTCCATGCGGTTTCTAGATCCCACCGCTTT GACCAGCCAGAAGATATTTTCTTCCTTCACCAATCCTTTGCGTTGCGGTCACCTCAACCT CTCCTTCTTCTCCTTGTGCCCCCTCTGTTTCCCACCTCGGCCTGCCGTCAATCCACCGCG GCCGTCACCTTCGCTTCCATCAAAACATCAGATAAGCGTCGGCTACCCGCTCCTCAATCC CTGCCCGCAGCGCCCTCGACGGTCTGCCTCCCTCGCTGGCGCTGGACGGGGGATTGGGAG GGGAAATAGGAATCCCCACGACAGGAAGCACATGAGGAGGTGAATGCAAGCCATGACAGC GGCCACGCACGGGAGGGTGGAGGGGCACATGCGGATGCTGGTAGCGCACACCTCGGGTGC CGTAGGTCTTTCTCTGTACTTGCGACAGGCTGCTGCAAGATGAGGGTCGACGGTCCGAGA GGTCGAACTGCGCTGCATTTAGCGCCGCCATCAAGCATAGCATCGCAAGTAGCAGGAAAT TACGGTGAGTTTGCCCCAGCAGTAAGACCACATCTGCTCAGGGCGTCATGAAAAGCCTAA GAATCGGTTGTTCTCTACCAAACATAGTAGGCCTAGAGGTTGCAGCCAGTCTGCCCTGTA GCTGTATTGCCGGATGGATGGACCGATTGCTTACAACATGGTCCAATGGCCTAATGCTTA CGTCGAGATTTGTTGCACACGGTGGAAACTGGGAGCATCACTCTCCTTGACTGGAATCAC AGTGGCCAGATTATAGATCACACAAGCTGTTGTTTTTTAGCCGTGGTGTATGAGGCTTGA AGGCTTCTTCACAAGATTGTAGAAGGGCCTGAATTTATTAATGATAGAAATGAAATGCTC CCATAATTGTTCAAGGATTTCTCCGTAGTATCATTGCTCTCAGAGCTAAGAACCTTACTT TGTTATTGAAGTGAGAATGTTTTATCTCTTGAATTAATGCCGATGAAGAATTGTAATTCT GATATTATTTATAAATGCATTTTAAGATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_7060 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |