barSeed - Barley Seed Development Database

Probe CUST_41355_PI390587928

Source Contig U35_7066

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41355_PI390587928	Hv_44K_v2	TCATACAAATACTTGAGTCCTCCTATCTCTGAATTACGACTCTTAAACCCGGTGACCCTT	1195	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.080	1.566	1.401	1.012	0.390	0.375
Raw	338.938	768.779	596.865	670.344	90.564	97.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251831.1	2207	7e-23	1121 - 1181	98	60 / 61	plus	ABC16617
MLOC	MLOC_69565.2	1903	7e-23	1217 - 1277	98	60 / 61	plus	ABC16617
MLOC	MLOC_69565.1	2532	7e-23	1982 - 2042	98	60 / 61	plus	ABC16617
JLOC1	JLOC1_46101.1	1510	4e-23	820 - 880	98	60 / 61	plus
Harvest21	ABC16617	1255	3e-25	1196 - 1255	100	60 / 60	plus	ABC16617
Harvest35	U35_7066	1255	3e-25	1196 - 1255	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_7066 1255 Hv_44K_v2
GCACCCGTCCACCCCCCAGCGTATTCCGCAGCCGCCGCCCCGCGCCCTTGCCGCCGTTGC
CAGCCTAATCTTTTGGCAACACACACAGAGCTGCCACACGCCATGGAGGAGACGAAACCC
ACCCCCGCACCCCCCCTCTTCTCCTTCTCCAACCCCAGCGGCTCCTTCGGGTTCGGGTTT
GGCGCCGCTCCCGGCCCTCCCCCTCCGCCTCCGCCGCCAGCTGTCGAGGTCCTCCTCTCC
GAGGAATCGCCCATCGCGGCCGGCAACTTGGAGCCTGTGGTGGTTGACGACTCCCTATCG
ATTTACAAGGGAAGAGTTAACACCTCTGATGTTTTCGGGGTAAAAAACTCTGATTTGGTT
CCAGGAAAATATGAAGGTGGGTTGAAGCTGTGGGAAGGATCATTGGACTTGGTGAAAACC
CTAAATTCAGACATCAAAGATGATCGACTGCTTATAGAAGGCAAACACATACTAGAGTTA
GGATGTGGACATGGCCTCCCTGGTATCTATGCCGCTCTGAAGGGTGCTGGTCTAGTTCAC
TTTCAGGATTTCAATGCTGAGGTTCTTAGGTGCCTTACCATCCCAAATGTAAAAGCTAAT
CTGTTCAAGGAATCATCTCAAGGAACATTCACATCTAGGAGTGTTGGTTTTTATGCTGGT
GATTGGGGTGAAATCGACAAGTTACTTCTTCGCGGAGATGCTGTCCAGGATAAAACAACC
AATCTTCAAACAGAAAATGAAGGGTATAGAGGTTATGATATCATCCTGATGGCTGAGACT
GTTTATGCATTGGATTCACTTCCTAGTCTCTACAGGCTCATCAAGAAGTGCTTACACTAC
CCTAGTGGTGTAGTTTATATGGCAGGGAAAAAGCATTACTTTGGTGTAGGTGGTGGCACA
AGGCAATTTCTACGCTTGGTTACAGAAGATGGTGCCCTGCAGTCGGACCTGCTTGCTGAA
GTTACTGATGGATCATCCAATGTTAGGGAGGTTTGGAAATTCTCATTCAAGTAGACTAGC
ATAGCCTCTGTAATTGTTGTATCAGATACAAACGTGTACTTGGCTCTATACTGGTAGAGT
GTCAGCCTTGGTTTAGTCGTTTCATGGTGTTTTAATGCACTGTTAGTTTCACTTTCAAGT
TGACTGTTTATGAGCTCTTATTCCGATAAGAAGCCCATGTTTTACTCTTGAGAAGTCATA
CAAATACTTGAGTCCTCCTATCTCTGAATTACGACTCTTAAACCCGGTGACCCTT

Homology of Contig U35_7066 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19570.1	313	1e-157	protein\|AGAP009532-PA, putative, expressed
Brachypodium v1_2	Bradi4g28580.1	307	3e-168
Arabidopsis v10	AT4G14000.1	290	8e-97	Putative methyltransferase family protein \| chr4:8090851-8092347 FORWARD LENGTH=290