- Probe CUST_41340_PI390587928
- Source Contig U35_7081
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_41340_PI390587928 | Hv_44K_v2 | GACCATTTTTGCCTGAATGCTGGAACGTAGCATCATTTATATATGTATTCGTCATTAGTT | 547 | GeneList: grey60 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 5.594 | 4.483 | 1.369 | 0.648 | 0.331 | 0.347 |
Raw | 283.220 | 389.496 | 97.806 | 77.765 | 12.434 | 14.681 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12052.1 | 2653 | 2e-24 | 410 - 469 | 100 | 60 / 60 | minus | ABC15016 |
JLOC1 | JLOC1_8050.2 | 2449 | 8e-25 | 2282 - 2341 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_8050.1 | 2245 | 8e-25 | 2078 - 2137 | 100 | 60 / 60 | plus | |
Harvest21 | ABC15016 | 624 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus | ABC15016 |
Harvest35 | U35_7081 | 624 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus |
Contig Sequence (624 bp)
>U35_7081 624 Hv_44K_v2 GCACGAGGCAAACGGCCGCTTCCAGTCAGTTGGATCTGATCTTACCCGCACACGGGAGCT ACCGGAGCAGCAGCAGCAGCAGAATAACAAAGACCCAAGCAGGACTCCCACCAGCAATCG CGAGCCGGCTACGTCCCTGGAGAGTGGGGTGCTCGGGCAAAGGACCAGGAAGTCTCTGGC TGGCAACGAGTCGATGTGCACGCCGGACAAGCGGACCAGGAAGACCAGCATGGTGAAGGA GCCGATCCTCCAGCAGGTCAAGCGGCAGAAGTCCGTGGTTCAGTGAGGCGGCACGGAACC TCAAGGAGCCTCAGCGCAACTAACATCGTAGGTCAGGCGAAGAAGCAGATATCCACCCCT AGTTCAGTACTTCAGTTCGTTGGTTCAGGTGCTTGAAACTTGTGAAGATAGCGACGACGG AGCACCCCCCGGCAGATGTAGATCCTTGTCCCTAGCTCTATCCTTGGTAGCAAGACGTAA ACGAGAGAGATGTGTGCCCCCTGAGACGTGTTGTTCGTGATGTTTGTTTCACGGGAGACT GTACTGAGACCATTTTTGCCTGAATGCTGGAACGTAGCATCATTTATATATGTATTCGTC ATTAGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_7081 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |