barSeed - Barley Seed Development Database

Probe CUST_41271_PI390587928

Source Contig U35_16851

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41271_PI390587928	Hv_44K_v2	CACTCTTGATCTCCTCCAAACAGTCTCAAAGCTGAAGTCAGCCAGATTTTCATTAAAAAA	1263	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.470	1.420	1.025	1.073	0.561	0.614
Raw	1983.277	3011.445	1900.450	3179.567	578.941	684.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15719.1	1003	2e-21	693 - 746	100	54 / 54	plus
Harvest21	ABC44644	555	3e-25	12 - 71	100	60 / 60	minus	ABC44644
Harvest35	U35_16851	1334	3e-25	1264 - 1323	100	60 / 60	plus

Contig Sequence (1334 bp)

>U35_16851 1334 Hv_44K_v2
CAGCCAAAAGGGGGAAGAGAGAAAAATACCCTCATTTTCTCCGCGAACCCCAAAACCCTC
GCGGCTACTCCCCTTCTTCTTTCCCCTTCTCCGGCTGCTTACCGGATTCGCCTCGCAGGC
TCGGGATCCGGGCGTTCCGTGCGATGGCCGGCGGCGACGGCGACGGCGGCGCGGTGGAGG
AGCTGACGGCGCAGGAGACAGCGCTCTACGACCGCCAGATCCGCGTCTGGGGCGTCGATG
CCCAGAAGAGGCTAAGTAAAGCGCATGTGCTTGTGTGCGGCGTGAACGGTACTACTATTG
AGTTCTGCAAAAATATTGTTCTAGCAGGAGTTGGCAGTTTATCCTTGATGGACGATCACG
TAGTCACGGAGGATGATCTCAATTCAAACTTCCTAATTCCTCATGATGAGAGTATGTATG
GTGGTAAATCACGGGCAGAGGTTTGCTGCGAGTCCTTAAAAGATTTCAATCCAATGGTCC
GAGTTGCTGTTGCAAAAGGTGACCCATCACTAAATGATGGAACATTCATTGACAGGTTCG
ACATTATTGTAGTCAGCTGCGCATCTCTTAAAACAAAGTTGTTTATTAATGACAACTGCC
GGAAGAGAAGCAAGCATATTGCCTTCTACTCTGTAGAGTGCAAGGATTCTTGTGGTGAAA
TATTTGTTGATCTGCAGAACCATAGCTATCTTCAGAAGAAGCCTGGAGGAGAACCTGAAC
AGCAGGAGTTGACATATGCTAGCCTGCAGGAAGCTATTTCTGTGCCCTGGAAGAATCTGC
CCAAAAAAACAACTAAACTGTACTACGCCATGAGAGTCTTGGAAAGTTATGAATTATCTG
AAGGGCGCAATCCTGGTGAGACAGCACTTTCTGATCTACCTGCAATTTTGGCTTGGAGGA
AAGATATGTGTGATAGAATGTCTTTAAGCGAGTCTCAAATTCCTACGGCTCTACTGGAAC
GGCTTTTAGCAGCTGGAAAGAAGGAACATCCTCCTGTATGTGCAATCCTTGGTGGCATTC
TTGGTCAGGAGGTGATCAAGTCTATATCTTGTAAGGGCGACACGATCAAGAGTTTCTTTT
ATTTTGACACAGCTGATGGTAAAGGTGTCATGGAGGACATCCCCCCAACTCCGGTAGAGC
AATTTGCGTGATGCCTAACTCAAATTGGTCATTAATCGCTGGTTATTGTACCCAATCATT
AGAGACAAACAGGCGAACATGTGACAACTCCATTGTAGCGTTGGCACCCGAGTACTGTAT
TGACACTCTTGATCTCCTCCAAACAGTCTCAAAGCTGAAGTCAGCCAGATTTTCATTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_16851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g30410.1	329	0.0	protein\|ThiF family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g18870.2	329	0.0
Arabidopsis v10	AT4G24940.1	322	5e-133	\| Symbols: SAE1A, AT-SAE1-1, ATSAE1A \| SUMO-activating enzyme 1A \| chr4:12823651-12825971 FORWARD LENGTH=322