barSeed - Barley Seed Development Database

Probe CUST_41270_PI390587928

Source Contig U35_16852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41270_PI390587928	Hv_44K_v2	AGGCAGGCAGGCTATTGAATGGTGAAATGTTTTATTTCTGCTTGCATTAGTAGTGGTTAA	617	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.314	1.834	1.184	0.859	0.435	0.458
Raw	1814.730	2194.427	1285.649	1405.300	260.000	299.151

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06882	692	3e-25	618 - 677	100	60 / 60	plus	ABC06882
Harvest35	U35_16852	692	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_16852 692 Hv_44K_v2
CTATCTCTGTGCCCTGGAAGGATCTGTCCAAAAAAACAACTAAACTGTACTACGCGATGA
GAGTCTTGGAAAGTTATGAATCATCTGAAGGGCGCGACCCTGGTGAGACATCACTTTCTG
ATCTACCCGCACTTTTGGCTCGGAAGAAGGATATGTGTGATAGAATGTCTTTGGACGAGT
CTAAAGTTCCGACGTCTCTCCTGGAACGGCTTCTAGCAGCTGGGAAAAAGGAACATCCTC
CTGTATGTGCAATCCTTGGTGGCATTCTTGGTCAGGAGGTGATCAAGTCAATATCTTGTA
AGGGCAATCCAATCAAGAATTTCTTTTACTTCGACGCCGCTGATGGTAAAGGGGTCATGG
AGGACATCCCCCCAACTCCTGAAGACTGAATCACGTGATACCTAACTCTCATCCGACATG
GCTCGCTGATAATTGTACCCAATCATCAGAGTCGAACATGTGACAACTCTAGTTCGGTGG
CTGAGGCTGGAAACTCAACTTAGCATTTTAGCGTTTTTGTTGTTGTACTTAGCGTTTTAG
CGATGGCATCATGCTATGACACCTGAGAACTGCATTGAACAGAATTGACATTCTCCTCGG
AACAATTTCAAAGCTGAAGGCAGGCAGGCTATTGAATGGTGAAATGTTTTATTTCTGCTT
GCATTAGTAGTGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g30410.1	329	1e-65	protein\|ThiF family domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g18870.2	329	2e-75
Arabidopsis v10	None