barSeed - Barley Seed Development Database

Probe CUST_41264_PI390587928

Source Contig U35_16858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41264_PI390587928	Hv_44K_v2	ACTTATGTACATATAAAGCGTATGCTTGTACTCCCCGTGACAGTGAGAAACCCAGTCCAT	1525	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63787.2	3347	2e-24	3235 - 3294	100	60 / 60	plus	ABC07362 ABC09216
MLOC	MLOC_63787.3	1571	2e-24	1459 - 1518	100	60 / 60	plus	ABC07362 ABC09216
JLOC1	JLOC1_41822.2	3274	8e-25	3106 - 3165	100	60 / 60	plus
JLOC1	JLOC1_41822.1	1624	8e-25	1456 - 1515	100	60 / 60	plus
Harvest21	ABC07362	1604	3e-25	1526 - 1585	100	60 / 60	plus	ABC07362
Harvest35	U35_16858	1618	3e-25	1526 - 1585	100	60 / 60	plus

Contig Sequence (1618 bp)

>U35_16858 1618 Hv_44K_v2
CACACGCGCCACCGCAGACGCAACCCGCGGCACGGCCCGGCCCGGAACCAACCTACCGAA
CGACGCACGCCACCGCACCGCACCGCGCCCTTTCCGCCGCCGCCGTGCCCTCCGTTCCGC
GGCTCCGGCCGGCCGTCGTGGGCCCCCACGGGCTACGCGGGGATCGCACGCGCGCGGGGG
GAGGCCGAGGGGCAGGGGCAGGGGTGCGCGGCCGGCGACGCGTGGGGGGTGCGGCTGGAG
GCGGAGGAGGGAGGGGATGGAGAAGTACGAGGCGGTGCGGGACATCGGGTCGGGCAACTT
CGGGGTGGCGCGGCTGATGCGCAACCGCGAGACCCGCGAGCTCGTCGCCGTCAAGTGCAT
CGAGCGCGGACACCGGATTGACGAGAATGTCTACAGGGAGATCATCAACCACCGCTCGCT
GCGCCACCCCAACATCATCCGCTTCAAGGAGGTGGTACTGACGCCAACAAATCTTATGAT
TGTCATGGAGTTCGCAGCAGGTGGGGAGCTGTTTGAGCGGATCTGTGATCGCGGGCGGTT
CAGTGAGGATGAGGCAAGGTATTTCTTTCAGCAGTTGATCTGTGGTGTGAGCTACTGCCA
TCACATGCAAATATGCCATAGAGATTTGAAGCTGGAGAATGTTCTCTTGGATGGCAGTGC
AGCTCCACGGCTCAAAATATGTGATTTTGGCTACTCCAAGTCATCAGTACTGCATTCAAG
GCCCAAATCAGCAGTGGGGACGCCAGCATATATTGCACCAGAGGTGCTATCCCGACGTGA
GTATGATGGAAAGCTTGCAGATGTGTGGTCTTGTGGGGTGACTCTTTACGTCATGCTTGT
GGGAGGCTACCCATTTGAAGACCAGGATGACCCCAAGAATATACGCAAGACCATTCAGCG
AATAATGTCTGTGCAATACACTATACCTGATCATGTCCACATATCCACGGAATGCAGACA
GCTTATGGCCAGTATCTTTGTTAACGTCCCATCGAAGAGAATCACGATGAGGGAAATAAA
GAGCCACCCGTGGTTCTTGAAGAACCTGCCAAGGGAGCTCACTGAGACGGCGCAGGGCAT
GTACTACAGGAGGGATAACGCCGTGCCTTCTTTCTCGGAGCAGACCTCAGAGGAAATCAT
GAAGATTGTCCAGGAGGCAAGGACCATGCCGAAGTCATCCAGGCCAAGCTATGGTTGGGG
CGACGACGGTTCAGATGACGAGGAAGAGAAGGAAGGGGAAGACCGACCAGAAGAGAGGGA
GGAGGAGGAGGACGAGTACGACAAGAGGGTCAAGGAGGTCCATGCAAGCGGAGAGCTCCG
CATGAGCTCGCTACGCATATCATGAAAGTATGCGGAGTAAGTTACCTGTAGATAATCGGG
CTATCGTGGGACTTGTGCGCTCAGTTGGGTAATGCAATTTTTGCTGGAAGTTTGCTTCTC
TTTGGTTTTGGTTCCTGTAACGTAATTTACATGGGACAAAGGGGGCTTGATGAATGCTGT
AATATTTGGCTCTTGACAGAGGAAAACTTATGTACATATAAAGCGTATGCTTGTACTCCC
CGTGACAGTGAGAAACCCAGTCCATCCAGAGGTTCGTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64970.1	361	0.0	protein\|CAMK_CAMK_like.11 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g56267.1	362	0.0
Arabidopsis v10	AT5G63650.1	360	3e-172	\| Symbols: SNRK2-5, SNRK2.5, SRK2H \| SNF1-related protein kinase 2.5 \| chr5:25481631-25483495 REVERSE LENGTH=360