barSeed - Barley Seed Development Database

Probe CUST_41257_PI390587928

Source Contig U35_28836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41257_PI390587928	Hv_44K_v2	TCTATATTGGTCATATGGCCTCTACTGGTCACTTTCTTCCTCCCTTGTTTCTTTGGACGG	253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14779.2	1432	2e-24	401 - 460	100	60 / 60	plus	ABC02464 ABC02465
Harvest21	ABC27918	688	3e-25	254 - 313	100	60 / 60	plus
Harvest35	U35_28836	688	3e-25	254 - 313	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_28836 688 Hv_44K_v2
GCTCCTCGCGACTAACCCCTCTCGAATCCCAGCCAACTAGCGCCCAATCCACGGAGAATT
GGGTTGATCCTTGTGCTGTGTTTGTTCCCGTTCTCGGATCCTGGACCAGGATCCGACCAA
GAGCCCAGATCTGCTGGTAGAGTTTCTGCGGGAAATATTGCAAGCCTTTTCTTATTCAGG
CTTTTAGGGGAGTGCAATTTTAGTGGGGTTGACGCGTTGGATACCGCGGGTGTTGATTGG
ATCGATCCATCAGTCTATATTGGTCATATGGCCTCTACTGGTCACTTTCTTCCTCCCTTG
TTTCTTTGGACGGTTCCCTTGATGTTGCCATTTCCTGCAGGTTGTTCGTCGCCAGCATGG
GTCTGGCGAAGGATGGCGCCGAGATGGAGGAGGGGACATTGGAGATCGGCATGGAGTATA
GGACTGTCTCCGGTGTGGCAGGGCCGTTGGTTATTTTGGACAAAGTAAAGGGCCCAAAGT
ATCAGGAGATTGTGAACATCCGATTGGGAGATGGCACCACTCGTCGTGGTCAAGTCCTCG
AAGTTGATGGTGAAAAAGCTGTTGTGCAGGTCTTTGAAGGTACTTCCGGGATAGACAACA
AGTATACTACTGTGCAGTTTACAGGCGAGGTTTTGAAAACTCCTGTCTCACTTGATATGC
TTGGCCGCATTTTTAATGGTTCTGGAAA

Homology of Contig U35_28836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37180.1	489	1e-63	protein\|ATP synthase, putative, expressed
Brachypodium v1_2	Bradi3g08290.1	488	3e-67
Arabidopsis v10	AT4G38510.5	494	9e-61	ATPase, V1 complex, subunit B protein \| chr4:18011155-18014897 REVERSE LENGTH=494