barSeed - Barley Seed Development Database

Probe CUST_41220_PI390587928

Source Contig U35_32124

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41220_PI390587928	Hv_44K_v2	TACCTCAACACCCACCAGAAGCAGATGGTGCTGGACAACCTGAAAGACTACGCGATGCGG	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252170.1	1143	2e-24	310 - 369	100	60 / 60	plus	ABC11667 ABC11741
MLOC	MLOC_63838.2	1694	7e-23	813 - 872	98	59 / 60	minus	ABC11667 ABC11741
MLOC	MLOC_63838.1	2056	7e-23	1257 - 1316	98	59 / 60	minus	ABC11667 ABC11741
MLOC	MLOC_63838.3	861	7e-23	740 - 799	98	59 / 60	minus	ABC11667 ABC11741
JLOC1	JLOC1_41857.1	2064	4e-23	747 - 806	98	59 / 60	plus
Harvest21	ABC11667	846	3e-25	13 - 72	100	60 / 60	plus	ABC11667
Harvest21	ABC11666	881	1e-23	328 - 387	98	59 / 60	plus
Harvest35	U35_32124	465	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_4257	1282	1e-23	328 - 387	98	59 / 60	plus

Contig Sequence (465 bp)

>U35_32124 465 Hv_44K_v2
AGCTCGGGCTCCCCGTGCGCCCACCGCGCGCGCTCCACTCACTTCCTCTTCTTCACCCCA
CCACCACCACCACCACTCGGTTTGGGTCGCATTCATATCGCTTACTCCGCACTCCACTCG
AGAATGCAGCAGCAGCAGCCGGCGCGGCGGCGGCGGAGCCCGGGCGGCGGGGAGTGGGAG
GGGGCGGGCACGGTGGACGAGGCCTCCATGGAGCGCAGCAAGAGCTTCGTCAAGGCCCTG
CAGGAGCTCAAGAACCTGCGCCCGCAGCTCTACTCCGCCTCCGAGTACTGCGAGAAGTCC
TACCTCAACACCCACCAGAAGCAGATGGTGCTGGACAACCTGAAAGACTACGCGATGCGG
GCGGTTGTCAACGCCGTCGACCACCTAGGCACGGTGGCCTACAAGCTGACGGACCTGTTC
GGGCAGCAGGCGTCCGAGATCTCGACATTCGAGCTCAAGCTTGCG

Homology of Contig U35_32124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g50800.2	303	2e-51	protein\|expressed protein
Brachypodium v1_2	Bradi2g15510.2	244	3e-55
Arabidopsis v10	None