barSeed - Barley Seed Development Database

Probe CUST_41205_PI390587928

Source Contig U35_20155

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41205_PI390587928	Hv_44K_v2	TCTGCCTTTGGAATCTTGGTCGGGCTGGCAGAGATGATGAAGCAGGAGTCGTGGATGGAG	32	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70659.1	2053	2e-24	453 - 512	100	60 / 60	plus	ABC15670
MLOC	MLOC_70659.2	1914	2e-24	431 - 490	100	60 / 60	plus	ABC12811 ABC15670
JLOC1	JLOC1_46901.1	1993	8e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_20155	548	3e-25	33 - 92	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_20155 548 Hv_44K_v2
GCTCCGCGCCCACTCCCCCTCTCTCCTCCTCCTCTGCCTTTGGAATCTTGGTCGGGCTGG
CAGAGATGATGAAGCAGGAGTCGTGGATGGAGGTGCTGCCGGTGCCGCCGGCGCCCTACT
TCGCGGGCCAGGCAGGCGGCTGGTTCCTGCAGGACCAGCGGGGCGGGGCGTGGTCGCCGG
CGGAGAACAAGCTCTTCGAGGAAGCGCTCGCGCGGGTCGACTGCGACGCGCCGGACCGGT
GGGAGCGGGTGGCGTCTCTGCTGCCCGGCAAGACGGTGGCGGACGTCATGACGCACTACG
ACGACCTGGAGAACGACGTGTGCTTCATCGAGGCGGGCCTCGTCCCCTTCCCCCACTACA
ACGCCAACGCCGGCTCCCCGGCCTCCGGATTCACCCTCGACTGGGACGACGGCGGCGACC
TGGCGTTCAAGCGCTCCTGCTACATGGTGGGAGGCAACGGCGGCAAGCGCGGGCGCGGCT
CGGAGCAGGAGCGCAAGAAGGGCGTGCCATGGACAGAGGAGGAGCACAAGCTCTTCTTGA
TGGGCCTG

Homology of Contig U35_20155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37730.1	316	2e-74	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g23710.1	302	2e-79
Arabidopsis v10	None